期刊
BIOINFORMATION
卷 18, 期 1, 页码 1-13出版社
BIOMEDICAL INFORMATICS
DOI: 10.6026/97320630018001
关键词
Crocus sativus; de-novo genome assembly; apocarotene biosynthesis pathway; MYB TFs; SSR markers; Orthology analysis
资金
- DST-Women Scientist-A research grant [SR/WOS-A/LS-96-2018]
- Mazundar-Shaw Chair in Computational Biology at Institute of Bioinformatics and Applied Biotechnology, Bengaluru, India
The draft genome sequence of C. sativus was reported in this study. The draft genome is 3.01 Gb long and contains 53,546 functional genes and 862,275 repeats.
Saffron (Crocus sativus L.) is the low yielding plant of medicinal and economic importance. Therefore, it is of interest to report the draft genome sequence of C. sativus. The draft genome of C. sativus has been assembled using Illumina sequencing and is 3.01 Gb long covering 84.24% of genome. C. sativus genome annotation identified 53,546 functional genes (including 5726 transcription factors), 862,275 repeats and 964,231 SSR markers. The genes involved in the apocarotenoids biosynthesis pathway (crocin, crocetin, picrocrocin, and safranal) werefound in the draft genome analysis.
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