Inhibitor tolerance and bioethanol fermentability of levoglucosan-utilizing Escherichia coli were enhanced by overexpression of stress-responsive gene ycfR: The proteomics-guided metabolic engineering

Conversion efficiency of bioethanol from levoglucosan was improved by the newly engineered Escherichia coli

(2021) Dongdong Chang et al.   Environmental Progress & Sustainable Energy

An acid-tolerance response system protecting exponentially growing Escherichia coli

(2020) Ying Xu et al.   Nature Communications

Ea22 Proteins from Lambda and Shiga Toxin-Producing Bacteriophages Balance Structural Diversity with Functional Similarity

(2020) Jinge Tong et al.   ACS Omega

Construction of an Escherichia coli strain to degrade phenol completely with two modified metabolic modules

(2019) Bo Wang et al.   JOURNAL OF HAZARDOUS MATERIALS

Enhanced acid-stress tolerance in Lactococcus lactis NZ9000 by overexpression of ABC transporters

(2019) Zhengming Zhu et al.   Microbial Cell Factories

Cryo-EM Structure of a Bacterial Lipid Transporter YebT

(2019) Chuan Liu et al.   JOURNAL OF MOLECULAR BIOLOGY

Efficient bio-butanol production from lignocellulosic waste by elucidating the mechanisms of Clostridium acetobutylicum response to phenolic inhibitors

(2019) Hongzhen Luo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Quorum Sensing in Pseudomonas savastanoi pv. savastanoi and Erwinia toletana: Role in Virulence and Interspecies Interactions in the Olive Knot

(2018) Eloy Caballo-Ponce et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The di-iron RIC (YtfE) protein of Escherichia coli interacts with the DNA-binding protein from starved cells (Dps) to diminish RIC-protein-mediated redox stress

(2018) Liliana S. O. Silva et al.   JOURNAL OF BACTERIOLOGY

Proteomic and metabolomic analysis of the cellular biomarkers related to inhibitors tolerance in Zymomonas mobilis ZM4

(2018) Dongdong Chang et al.   Biotechnology for Biofuels

The BioGRID interaction database: 2019 update

(2018) Rose Oughtred et al.   NUCLEIC ACIDS RESEARCH

Improvement in ethanol productivity of engineered E. coli strain SSY13 in defined medium via adaptive evolution

(2017) Syed Bilal Jilani et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Local and global regulation of transcription initiation in bacteria

(2016) Douglas F. Browning et al.   NATURE REVIEWS MICROBIOLOGY

Mathematical modeling of the fermentation of acid-hydrolyzed pyrolytic sugars to ethanol by the engineered strain Escherichia coli ACCC 11177

(2015) Dongdong Chang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial conversion of pyrolytic products to biofuels: a novel and sustainable approach toward second-generation biofuels

(2015) Zia Ul Islam et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering

(2015) Jorge Alonso-Gutierrez et al.   METABOLIC ENGINEERING

Transcriptomic analysis of Corynebacterium glutamicum in the response to the toxicity of furfural present in lignocellulosic hydrolysates

(2015) Hong-Sil Park et al.   PROCESS BIOCHEMISTRY

A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E

(2014) Sonya M Clarkson et al.   Biotechnology for Biofuels

Production of Clean Pyrolytic Sugars for Fermentation

(2014) Marjorie R. Rover et al.   ChemSusChem

Alkali Metals in Addition to Acidic pH Activate the EvgS Histidine Kinase Sensor in Escherichia coli

(2014) Y. Eguchi et al.   JOURNAL OF BACTERIOLOGY

Production of the short peptide surfactant DAMP4 from glucose or sucrose in high cell density cultures of Escherichia coli BL21(DE3)

(2014) Michele Bruschi et al.   Microbial Cell Factories

Overliming detoxification of pyrolytic sugar syrup for direct fermentation of levoglucosan to ethanol

(2013) Zhanyou Chi et al.   BIORESOURCE TECHNOLOGY

Engineering furfural tolerance in Escherichia coli improves the fermentation of lignocellulosic sugars into renewable chemicals

(2013) X. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergent Molecular Evolution of Genomic Cores in Salmonella enterica and Escherichia coli

(2012) Sujay Chattopadhyay et al.   JOURNAL OF BACTERIOLOGY

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Increased Furfural Tolerance Due to Overexpression of NADH-Dependent Oxidoreductase FucO in Escherichia coli Strains Engineered for the Production of Ethanol and Lactate

(2011) X. Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The copper-inducible ComR (YcfQ) repressor regulates expression of ComC (YcfR), which affects copper permeability of the outer membrane of Escherichia coli

(2011) Mélanie Mermod et al.   BIOMETALS

Engineering ethanologenic Escherichia coli for levoglucosan utilization

(2011) Donovan S. Layton et al.   BIORESOURCE TECHNOLOGY

Characterization of Outer Membrane Proteins of Escherichia Coli in Response to Phenol Stress

(2010) Dan-Feng Zhang et al.   CURRENT MICROBIOLOGY

Techno-economic comparison of biomass-to-transportation fuels via pyrolysis, gasification, and biochemical pathways

(2010) Robert P. Anex et al.   FUEL

Silencing of NADPH-Dependent Oxidoreductase Genes (yqhD and dkgA) in Furfural-Resistant Ethanologenic Escherichia coli

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Furfural Inhibits Growth by Limiting Sulfur Assimilation in Ethanologenic Escherichia coli Strain LY180

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Two Modes of Autoregulation of themurRRepressor inEscherichia coli

(2009) Daiki ISHII et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli

(2009) Tirzah Y Mills et al.   Biotechnology for Biofuels

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal

Structural Insights into the Catalytic Mechanism of the Bacterial Class B Phosphatase AphA Belonging to the DDDD Superfamily of Phosphohydrolases

(2008) Rosalida Leone et al.   JOURNAL OF MOLECULAR BIOLOGY

Genomics of cellulosic biofuels

(2008) Edward M. Rubin   NATURE