Site-Specific Profiling of 4-Thiouridine Across Transfer RNA Genes in Escherichia coli
出版年份 2022 全文链接
标题
Site-Specific Profiling of 4-Thiouridine Across Transfer RNA Genes in Escherichia coli
作者
关键词
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出版物
ACS Omega
Volume 7, Issue 5, Pages 4011-4025
出版商
American Chemical Society (ACS)
发表日期
2022-01-27
DOI
10.1021/acsomega.1c05071
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry
- (2020) Samuel Wein et al. Nature Communications
- Comparative tRNA sequencing and RNA mass spectrometry for surveying tRNA modifications
- (2020) Satoshi Kimura et al. Nature Chemical Biology
- Transcriptome-wide profiling of multiple RNA modifications simultaneously at single-base resolution
- (2019) Vahid Khoddami et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- 7-Deazaguanine modifications protect phage DNA from host restriction systems
- (2019) Geoffrey Hutinet et al. Nature Communications
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis
- (2018) Michael H. Schwartz et al. Nature Communications
- Thiol-linked alkylation of RNA to assess expression dynamics
- (2017) Veronika A Herzog et al. NATURE METHODS
- Detecting RNA modifications in the epitranscriptome: predict and validate
- (2017) Mark Helm et al. NATURE REVIEWS GENETICS
- MODOMICS: a database of RNA modification pathways. 2017 update
- (2017) Pietro Boccaletto et al. NUCLEIC ACIDS RESEARCH
- Sequence mapping of transfer RNA chemical modifications by liquid chromatography tandem mass spectrometry
- (2016) Robert Ross et al. METHODS
- OpenMS: a flexible open-source software platform for mass spectrometry data analysis
- (2016) Hannes L Röst et al. NATURE METHODS
- Novel genomic island modifies DNA with 7-deazaguanine derivatives
- (2016) Jennifer J. Thiaville et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids
- (2015) Paul J. Sample et al. NUCLEIC ACIDS RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
- (2014) Schraga Schwartz et al. CELL
- Radical mediated ring formation in the biosynthesis of the hypermodified tRNA base wybutosine
- (2013) Anthony P Young et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- A cross-platform toolkit for mass spectrometry and proteomics
- (2012) Matthew C Chambers et al. NATURE BIOTECHNOLOGY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
- (2012) Jeffrey E. Squires et al. NUCLEIC ACIDS RESEARCH
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Discovery of epoxyqueuosine (oQ) reductase reveals parallels between halorespiration and tRNA modification
- (2011) Z. D. Miles et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
- (2010) Markus Hafner et al. CELL
- RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
- (2010) M. Schaefer et al. GENES & DEVELOPMENT
- The RNA modification database, RNAMDB: 2011 update
- (2010) W. A. Cantara et al. NUCLEIC ACIDS RESEARCH
- The Deazapurine Biosynthetic Pathway Revealed: In Vitro Enzymatic Synthesis of PreQ0from Guanosine 5′-Triphosphate in Four Steps
- (2009) Reid M. McCarty et al. BIOCHEMISTRY
- Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data
- (2009) Hiroshi Nakayama et al. NUCLEIC ACIDS RESEARCH
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- tRNAdb 2009: compilation of tRNA sequences and tRNA genes
- (2008) F. Juhling et al. NUCLEIC ACIDS RESEARCH
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