Transposons Hidden in Arabidopsis thaliana Genome Assembly Gaps and Mobilization of Non-Autonomous LTR Retrotransposons Unravelled by Nanotei Pipeline
出版年份 2021 全文链接
标题
Transposons Hidden in Arabidopsis thaliana Genome Assembly Gaps and Mobilization of Non-Autonomous LTR Retrotransposons Unravelled by Nanotei Pipeline
作者
关键词
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出版物
Plants-Basel
Volume 10, Issue 12, Pages 2681
出版商
MDPI AG
发表日期
2021-12-07
DOI
10.3390/plants10122681
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential
- (2021) M. Timothy Rabanus-Wallace et al. NATURE GENETICS
- Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis
- (2021) Boas Pucker et al. BMC GENOMICS
- Jumpstarting evolution: How transposition can facilitate adaptation to rapid environmental changes
- (2021) Pierre Baduel et al. CURRENT OPINION IN PLANT BIOLOGY
- Genomic impact of stress-induced transposable element mobility in Arabidopsis
- (2021) David Roquis et al. NUCLEIC ACIDS RESEARCH
- Comprehensive identification of transposable element insertions using multiple sequencing technologies
- (2021) Chong Chu et al. Nature Communications
- High-quality Arabidopsis thaliana Genome Assembly with Nanopore and HiFi Long Reads
- (2021) Bo Wang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning
- (2021) Peng Ni et al. Nature Communications
- The current revolution in transposable element biology enabled by long reads
- (2020) Saima Shahid et al. CURRENT OPINION IN PLANT BIOLOGY
- Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato
- (2020) Michael Alonge et al. CELL
- Long-read cDNA Sequencing Enables a 'Gene-Like' Transcript Annotation of Transposable Elements
- (2020) Kaushik Panda et al. PLANT CELL
- The impact of transposable elements on tomato diversity
- (2020) Marisol Domínguez et al. Nature Communications
- Genomic and Transcriptomic Survey Provides New Insight into the Organization and Transposition Activity of Highly Expressed LTR Retrotransposons of Sunflower (Helianthus annuus L.)
- (2020) Ilya Kirov et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling
- (2020) Adam D. Ewing et al. MOLECULAR CELL
- Nanopore RNA Sequencing Revealed Long Non-Coding and LTR Retrotransposon-Related RNAs Expressed at Early Stages of Triticale SEED Development
- (2020) Ilya Kirov et al. Plants-Basel
- Copy Number Variation in Domestication
- (2019) Zoe N. Lye et al. TRENDS IN PLANT SCIENCE
- Transposition favors the generation of large effect mutations that may facilitate rapid adaption
- (2019) Leandro Quadrana et al. Nature Communications
- Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases
- (2019) Anurag Priyam et al. MOLECULAR BIOLOGY AND EVOLUTION
- Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genome
- (2019) Pucker et al. Genes
- The impact of transposable elements on the structure, evolution and function of the rice genome
- (2019) Roland Akakpo et al. NEW PHYTOLOGIST
- Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology
- (2019) Weichen Zhou et al. NUCLEIC ACIDS RESEARCH
- Relaxed purifying selection in autopolyploids drives transposable element over-accumulation which provides variants for local adaptation
- (2019) Pierre Baduel et al. Nature Communications
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Transposable elements: all mobile, all different, some stress responsive, some adaptive?
- (2018) Sophie Lanciano et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Retrotranspositional landscape of Asian rice revealed by 3000 genomes
- (2018) Marie-Christine Carpentier et al. Nature Communications
- Hidden genetic variation shapes the structure of functional elements in Drosophila
- (2017) Mahul Chakraborty et al. NATURE GENETICS
- The Arabidopsis thaliana mobilome and its impact at the species level
- (2016) Leandro Quadrana et al. eLife
- Terminal-Repeat Retrotransposons with GAG Domain in Plant Genomes: A New Testimony on the Complex World of Transposable Elements
- (2015) Cristian Chaparro et al. Genome Biology and Evolution
- Transposable element detection from whole genome sequence data
- (2015) Adam D. Ewing Mobile DNA
- The bright side of transposons in crop evolution
- (2014) C. Vitte et al. Briefings in Functional Genomics
- How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation
- (2014) Vladimir V. Cavrak et al. PLoS Genetics
- Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor
- (2013) Yu Fu et al. EMBO JOURNAL
- How important are transposons for plant evolution?
- (2012) Damon Lisch NATURE REVIEWS GENETICS
- Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data
- (2011) François Sabot et al. PLANT JOURNAL
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Epigenetic Regulation of Repetitive Elements Is Attenuated by Prolonged Heat Stress inArabidopsis
- (2010) Ales Pecinka et al. PLANT CELL
- Stress-Induced Activation of Heterochromatic Transcription
- (2010) Mireille Tittel-Elmer et al. PLoS Genetics
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Bursts of retrotransposition reproduced in Arabidopsis
- (2009) Sayuri Tsukahara et al. NATURE
- Selective epigenetic control of retrotransposition in Arabidopsis
- (2009) Marie Mirouze et al. NATURE
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