Article
Cell Biology
Tenghui Yu, Jesse Slone, Wensheng Liu, Ryan Barnes, Patricia L. Opresko, Landon Wark, Sabine Mai, Steve Horvath, Taosheng Huang
Summary: Mitochondrial dysfunction plays a crucial role in the aging process, and the accumulation of mutations in the mitochondrial genome is believed to contribute to this dysfunction. By studying a mouse model with error-prone mitochondrial DNA polymerase, researchers found that high levels of mitochondrial DNA mutations can lead to oxidative damage, compromised DNA integrity, and accelerated aging. These findings suggest that mitochondria play a central role in aging and may guide future research on potential therapeutics to mitigate the aging process.
Article
Biochemistry & Molecular Biology
Nadine Mueller, Andriy Khobta
Summary: The oxidation-induced DNA modification 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-oxodG) has been found to interfere with gene transcription activity in two distinct ways, affecting both the promoter activity and gene expression through different mechanisms. The excision preferences of the repair enzyme OGG1 for 8-oxodG at different positions lead to varying degrees of decrease in promoter activity. The presence of different lesions at specific positions can either silence gene expression or enhance promoter activity, suggesting a role for the AP endonuclease step in regulating the switch between active and repressed promoter states during base excision repair.
Article
Chemistry, Analytical
Yun Qiu, Bin Liu, Wenchao Zhou, Xueqing Tao, Yang Liu, Linxi Mao, Huizhen Wang, Hanwen Yuan, Yupei Yang, Bin Li, Wei Wang, Yixing Qiu
Summary: In this study, a DNAzyme-modified DNA tetrahedral nanomachine was designed for monitoring the activity of 8-oxoG DNA glycosylase. The method was successfully applied for screening inhibitors of 8-oxoG DNA glycosylase and assessing its activity in living cells.
Review
Biochemistry & Molecular Biology
Weiran Zhang, Ranwei Zhong, Xiangping Qu, Yang Xiang, Ming Ji
Summary: Excess reactive oxygen species (ROS) can lead to oxidative stress by disrupting the balance between oxidation and anti-oxidation. The main product of ROS-induced base damage is 8-hydroxyguanine (8-oxoG), which can cause mutations if not promptly removed during DNA replication. The OGG1-mediated oxidative damage repair pathway plays an important role in preventing dysfunction caused by oxidative stress.
Article
Chemistry, Analytical
Bocheng Tu, Zishan Feng, Haitao Wang, Wei Zhang, Weicong Ye, Hongbo Wang, Xianjin Xiao, Wenbo Zhao, Tongbo Wu
Summary: This new method utilizes lambda exonuclease and a background signal suppression probe, which successfully suppresses the background signal through probe structure design to achieve highly sensitive OGG detection. The detection limit is 5.0 x 10(-4) U mL(-1), and its potential clinical application value was demonstrated in biological samples.
ANALYTICA CHIMICA ACTA
(2021)
Article
Multidisciplinary Sciences
Seung-Gi Jin, Yingying Meng, Jennifer Johnson, Piroska E. Szabo, Gerd P. Pfeifer
Summary: This study provides detailed analysis of two types of oxidative DNA damage and its association with inflammation and cancer. The results show that the occurrence of oxidized guanines and oxidized thymines is dependent on specific DNA sequences and may lead to cancer-related mutations.
Review
Biochemistry & Molecular Biology
Yuliya Krasikova, Nadejda Rechkunova, Olga Lavrik
Summary: Nucleotide excision repair (NER) is a versatile DNA repair pathway that is linked to neurological degeneration in patients with Xeroderma pigmentosum. Xeroderma pigmentosum patients typically have a high sensitivity to ultraviolet light due to DNA repair defects, leading to multiple skin and eye cancers.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Lang Pan, Wenjing Hao, Yaoyao Xue, Ke Wang, Xu Zheng, Jixian Luo, Xueqing Ba, Yang Xiang, Xiaoqun Qin, Jesper Bergwik, Lloyd Tanner, Arne Egesten, Allan R. Brasier, Istvan Boldogh
Summary: This study reveals that reactive oxygen species (ROS) can induce epithelial cell-state transition and ECM deposition during airway injury. They found that oxidative DNA damage, specifically the formation of 8-oxoG lesions, functions as a pioneer factor in transcriptional reprogramming of airway epithelial cells. These findings provide important insights into the role of oxidative DNA damage in mediating profibrotic processes.
NUCLEIC ACIDS RESEARCH
(2023)
Article
Biochemistry & Molecular Biology
Yini Liu, Xiaowen Zhu, Ziyu Wang, Xiaoxia Dai, Changjun You
Summary: In human cells, DNA polymerase v and polymerase O play important roles in oxidative stress tolerance, translesion synthesis of 8-oxoG, and the G->T mutation frequency for 8-oxoG.
ACS CHEMICAL BIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Yini Liu, Xiaowen Zhu, Ziyu Wang, Xiaoxia Dai, Changjun You
Summary: Pols nu and theta play important roles in the replicative bypass of 8-oxoG in human cells, with Pol nu playing a key role in translesion synthesis of 8-oxoG.
ACS CHEMICAL BIOLOGY
(2022)
Review
Biochemistry & Molecular Biology
Vladimir Shafirovich, Nicholas E. Geacintov
Summary: Base excision repair (BER) and nucleotide excision repair (NER) are two major mechanisms that remove DNA lesions. Experimental evidence shows that oxidatively generated DNA lesions can be repaired by both competitive BER and NER pathways. The interaction between BER and NER pathways in repairing oxidatively generated DNA lesions is crucial for understanding DNA repair mechanisms.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biophysics
Hao Hu, Kejun Dong, Bei Yan, Yaoqin Mu, Yangwei Liao, Lei Zhang, Songcheng Guo, Xianjin Xiao, Xinyu Wang
Summary: This study proposed a shortened crRNA mode for the CRISPR-Cas12a system, greatly enhancing its signal-to-noise ratio. By taking advantage of this mode, a CRISPR-enhanced structure-switching aptamer assay (CESA) was developed for detecting 8-oxoG, which displayed impressive sensitivity and clinical practicability. Rating: 9/10.
BIOSENSORS & BIOELECTRONICS
(2023)
Article
Biochemistry & Molecular Biology
Sai Santosh Babu Komakula, Bhavya Blaze, Hong Ye, Agnieszka Dobrzyn, Harini Sampath
Summary: The BER glycosylase OGG1 plays a crucial role in modulating adipocyte differentiation and lipid accretion. Loss of OGG1 leads to increased fat accumulation in mice, while overexpression of OGG1 confers resistance to age- and diet-induced obesity. Mechanistically, changes in adipogenesis are associated with alterations in cellular PARylation, corresponding with OGG1 genotype.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Editorial Material
Microbiology
Reha Onur Azizoglu
Summary: The generation of reactive oxygen species (ROS) is a shared aspect of bacterial cell death under different stress conditions. The main mechanism of cell death is the incomplete base excision repair (BER) in response to oxidized nucleotides. In this study, the depletion of DapB and Dxr was found to cause similar cell death mechanisms, indicating that cells trigger distinct stress response mechanisms but share a common cell death process.
Article
Geriatrics & Gerontology
Haixia Zhao, Laixin Song, Na Ma, Chaoqi Liu, Yaoyan Dun, Zhiyong Zhou, Ding Yuan, Changcheng Zhang
Summary: The study investigated the mechanisms underlying the decline in testicular function with aging, highlighting the roles of oxidative stress, DNA damage, and impaired repair. It was found that the weakening antioxidant ability mediated by the Nrf2 pathway and damage to the BER capacity may lead to increased DNA damage and subsequent decline in testicular function during aging.
EXPERIMENTAL GERONTOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Richard D. Morgan, Yvette A. Luyten, Samuel A. Johnson, Emily M. Clough, Tyson A. Clark, Richard J. Roberts
NUCLEIC ACIDS RESEARCH
(2016)
Article
Biology
Matthew A. Schaich, Samantha L. Sanford, Griffin A. Welfer, Samuel A. Johnson, Thu H. Khoang, Patricia L. Opresko, Bret D. Freudenthal