4.2 Article

A Straightforward Method for Adipocyte Size and Count Analysis Using Open-source Software QuPath

期刊

ADIPOCYTE
卷 11, 期 1, 页码 99-107

出版社

TAYLOR & FRANCIS INC
DOI: 10.1080/21623945.2022.2027610

关键词

Adipocyte size; fat cell size; Qupath; Adipocyte Tools; ImageJ; obesity

资金

  1. Ministry of Social Affairs and Health [K47867]

向作者/读者索取更多资源

Changes in adipose tissue morphology are associated with overweight and obesity, low-grade inflammation, and common comorbidities. Quantifying fat cell morphology using QuPath software showed similar results to those obtained with ImageJ software, with good to excellent intraclass correlation between the two methods. This method can be applied to large tissue areas, including whole-slide analysis.
Changes in adipose tissue morphology, depicted by cell morphology alterations such as enlargement of fat cells, always accompany over-weight and obesity. The variables related to cell size have been shown to associate with low-grade inflammation of adipose tissue and common obesity-related comorbidities including metabolic syndrome and type 2 diabetes. Quantifying fat cell morphology from images of histological specimens can be tedious. Here, we present a straightforward method for the task using the free open-source software QuPath with its inbuilt tools only. Measurements of human adipose tissue samples with the described protocol showed an excellent correlation with those obtained with ImageJ software with Adipocyte Tools plugin combined with manual correction of misdetections. Intraclass correlation between the two methods was at good to excellent level. The method described here can be applied to considerably large tissue areas, even whole-slide analysis.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.2
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Medicine, General & Internal

Cohort profile: a nationwide population-based retrospective assessment of oesophageal cancer in the Finnish National Esophago-Gastric Cancer Cohort (FINEGO)

Henna K. Soderstrom, Jari Rasanen, Juha Saarnio, Vesa Toikkanen, Tuula Tyrvainen, Tuomo Rantanen, Antti Valtola, Pasi Ohtonen, Minna Paaaho, Arto Kokkola, Raija Kallio, Tuomo J. Karttunen, Vesa-Matti Pohjanen, Ari Ristimaki, Simo Laine, Eero Sihvo, Joonas H. Kauppila

BMJ OPEN (2020)

Article Immunology

Differential synovial tissue expression of TLRs in seropositive and seronegative rheumatoid arthritis: A preliminary report

Alzahraa Abdelwahab, Sanna Palosaari, Soha Abdelkawy Abdelwahab, Rehab Ahmed Rifaai, Nashwa Fathy El-Tahawy, Entesar Ali Saber, Tomi Nousiainen, Maarit Valkealahti, Johanna Huhtakangas, Tuomo J. Karttunen, Petri Lehenkari

Summary: Research on synovial tissue expression of Toll-like receptors (TLRs) in rheumatoid arthritis (RA) showed differences between seropositive and seronegative RA, potentially impacting disease outcomes. High expression of specific TLRs in seropositive RA may prime the synovium for reactions to citrullinated proteins and nucleic acids, which could contribute to inflammation.

AUTOIMMUNITY (2021)

Article Pathology

Pathophysiology of reflux oesophagitis: role of Toll-like receptors 2 and 4 and Farnesoid X receptor

Minna Nortunen, Nina Vakiparta, Katja Porvari, Juha Saarnio, Tuomo J. Karttunen, Heikki Huhta

Summary: The study evaluated the expression patterns of TLR2, TLR4, and FXR in patients with GERD, showing upregulation of TLR2 but no change in TLR4 expression in GERD; FXR expression was increased in GERD and might have a regulatory connection to TLR2.

VIRCHOWS ARCHIV (2021)

Article Gastroenterology & Hepatology

Carbonic Anhydrases II, IX, and XII in Reflux Esophagitis

Minna Nortunen, Nina Vakiparta, Seppo Parkkila, Juha Saarnio, Heikki Huhta, Tuomo J. Karttunen

Summary: This study examined the immunohistochemical expression patterns of CAII, CAIX, and CAXII in the normal esophageal squamous epithelium and in patients with GERD. The findings showed increased expression of CAII, CAIX, and CAXII in patients with GERD, potentially contributing to enhanced esophageal epithelial resistance to acidic reflux.

DIGESTIVE DISEASES AND SCIENCES (2022)

Article Oncology

Serological Biomarker Panel in Diagnosis of Atrophic Gastritis and Helicobacter pylori Infection in Gastroscopy Referral Patients: Clinical Validation of the New-Generation GastroPanel (R) Test

Olli-Pekka Koivurova, Ritva Koskela, Timo Blomster, Antti Ala-Rami, Henri Lumme, Olli Kettunen, Janne Hukkanen, Tuomo J. Karttunen, Markus Makinen, Jukka Ronkainen, Kari Syrjanen

Summary: This study evaluated the diagnostic accuracy of the new-generation GastroPanel test in detecting atrophic gastritis (AG) and Helicobacter pylori (Hp) infection, showing high precision in diagnosing these conditions in dyspeptic patients.

ANTICANCER RESEARCH (2021)

Article Cell Biology

Carbonic Anhydrases II and IX in Non-ampullary Duodenal Adenomas and Adenocarcinoma

Minna Nortunen, Seppo Parkkila, Juha Saarnio, Heikki Huhta, Tuomo J. Karttunen

Summary: Non-ampullary duodenal adenocarcinoma (DAC) is a rare malignancy with little information on histopathological prognostic factors. Carbonic anhydrases (CAs) are metalloenzymes associated with prognosis in various cancers. The study found low expression of CAII and comparable expression of CAIX in adenomas and adenocarcinoma, suggesting potential as biomarkers for epithelial dysplasia in the duodenum.

JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY (2021)

Article Gastroenterology & Hepatology

Risk of progression in Barrett's esophagus based on diagnoses of general and gastrointestinal pathologists. A retrospective case-control study from Northern and Central Finland

Heikki Huhta, Jukka Melkko, Teijo Kuopio, Tuomo J. Karttunen, Olli Helminen

Summary: This study compared the diagnostic accuracy of general and expert gastrointestinal pathologists in assessing the risk of Barrett's progression. It found that general pathologists tend to overdiagnose low-grade dysplasia (LGD), while LGD diagnosed by expert pathologists is a better predictor of disease progression.

SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY (2022)

Article Pathology

Predictive value of p53, Ki67 and TLR5 in neoplastic progression of Barrett's esophagus: a matched case-control study

Olli Helminen, Jukka Melkko, Juha Saarnio, Eero Sihvo, Teijo Kuopio, Pasi Ohtonen, Joonas H. Kauppila, Tuomo J. Karttunen, Heikki Huhta

Summary: The aim of this study was to evaluate the value of p53, Ki67, and toll-like receptor 5 (TLR5) in predicting the malignant progression of Barrett's esophagus. It was found that aberrant p53 expression is associated with a high risk of malignant progression in Barrett's low-grade dysplasia. Routine staining of p53 is recommended in expert confirmed low-grade dysplasia cases.

VIRCHOWS ARCHIV (2022)

Article Oncology

Monocarboxylate Transporters 1 and 4 and Prognosis in Small Bowel Neuroendocrine Tumors

Niko Hiltunen, Jukka Rintala, Juha P. Vayrynen, Jan Bohm, Tuomo J. Karttunen, Heikki Huhta, Olli Helminen

Summary: This study found that high MCT4 expression is associated with improved prognosis in small bowel neuroendocrine tumors (SB-NETs), while MCT1 expression is not correlated with survival.

CANCERS (2022)

Article Oncology

Putative anoikis resistant subpopulations are enriched in lymph node metastases and indicate adverse prognosis in colorectal carcinoma

Taneli T. Mattila, Madhura Patankar, Juha P. Vayrynen, Kai Klintrup, Jyrki Makela, Anne Tuomisto, Pentti Nieminen, Markus J. Makinen, Tuomo J. Karttunen

Summary: Anoikis refers to apoptosis induced by the loss of contact with the extracellular matrix. We have found that it is possible to quantitatively evaluate putative anoikis resistant subpopulations in colorectal carcinoma, and the abundance of these structures in lymph node metastases is associated with prognosis.

CLINICAL & EXPERIMENTAL METASTASIS (2022)

Article Endocrinology & Metabolism

Dynamics of adipose tissue macrophage populations after gastric bypass surgery

Ville A. Palomaki, Petri Lehenkari, Sanna Merilainen, Tuomo J. Karttunen, Vesa Koivukangas

Summary: This case-control study analyzed the macrophage infiltration in subcutaneous adipose tissue after bariatric surgery or conservative treatment of obesity, and investigated whether these features could predict weight loss outcome. The study found a significant decline in crown-like structures (CLS) density after surgery, regardless of weight loss. However, surgery had no effect on the infiltration of single-cell macrophages, and the abundance of these macrophage populations before surgery did not predict weight loss or response to surgery.

OBESITY (2023)

Article Oncology

TLR2 and TLR4 in colorectal cancer: relationship to tumor necrosis and markers of systemic inflammation

Karoliina Paarnio, Juha P. Vaeyrynen, Sara A. Vaeyrynen, Tiina Kantola, Timo Karhu, Taina Tervahartiala, Kai Klintrup, Timo Sorsa, Tuula Salo, Jyrki Maekelae, Tuomo J. Karttunen

Summary: This study found that tumor necrosis is associated with low TLR4 expression in cancer cells and that low TLR4 expression correlates with a strong systemic inflammatory response. In normal mucosa, low TLR2 expression is associated with high levels of systemic inflammation.

NEOPLASMA (2022)

暂无数据