Systematic Modeling, Prediction, and Comparison of Domain–Peptide Affinities: Does it Work Effectively With the Peptide QSAR Methodology?

Systematic Comparison and Comprehensive Evaluation of 80 Amino Acid Descriptors in Peptide QSAR Modeling

(2021) Peng Zhou et al.   Journal of Chemical Information and Modeling

Decoding Protein-protein Interactions: An Overview

(2020) Olivia Slater et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Peptide Phage Display: Molecular Principles and Biomedical Applications

(2020) Marlon S. Zambrano-Mila et al.   Therapeutic Innovation & Regulatory Science

Machine Learning in Quantitative Protein–Peptide Affinity Prediction: Implications for Therapeutic Peptide Design

(2018) Zhongyan Li et al.   CURRENT DRUG METABOLISM

The Development and Application of a Quantitative Peptide Microarray Based Approach to Protein Interaction Domain Specificity Space

(2014) Brett W. Engelmann et al.   MOLECULAR & CELLULAR PROTEOMICS

Combinatorial Peptide Libraries: Mining for Cell-Binding Peptides

(2013) Bethany Powell Gray et al.   CHEMICAL REVIEWS

Computational Peptidology: A New and Promising Approach to Therapeutic Peptide Design

(2013) P. Zhou et al.   CURRENT MEDICINAL CHEMISTRY

Structure-Based Prediction of Domain-Peptide Binding Affinity by Dissecting Residue Interaction Profile at Complex Interface: A Case Study on CAL PDZ Domain

(2013) Rongzhong Jin et al.   PROTEIN AND PEPTIDE LETTERS

Plasticity of PDZ domains in ligand recognition and signaling

(2012) Ylva Ivarsson   FEBS LETTERS

Synthetic peptide arrays for investigating protein interaction domains

(2012) Rudolf Volkmer et al.   FEBS LETTERS

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Characterization of PDZ domain-peptide interaction interface based on energetic patterns

(2011) Nan Li et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Engineering Peptide Inhibitors To Overcome PDZ Binding Promiscuity

(2010) Lars Vouilleme et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Combining peptide recognition specificity and context information for the prediction of the 14-3-3-mediated interactome in S. cerevisiae and H. sapiens

(2010) Simona Panni et al.   PROTEOMICS

Gaussian process: an alternative approach for QSAM modeling of peptides

(2009) Peng Zhou et al.   AMINO ACIDS

ST-scale as a novel amino acid descriptor and its application in QSAM of peptides and analogues

(2009) Li Yang et al.   AMINO ACIDS

Predicting liquid chromatographic retention times of peptides from the Drosophila melanogaster proteome by machine learning approaches

(2009) Feifei Tian et al.   ANALYTICA CHIMICA ACTA

Comprehensive comparison of eight statistical modelling methods used in quantitative structure–retention relationship studies for liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome

(2009) Peng Zhou et al.   JOURNAL OF CHROMATOGRAPHY A

Modeling and prediction of binding affinities between the human amphiphysin SH3 domain and its peptide ligands using genetic algorithm-Gaussian processes

(2008) Peng Zhou et al.   BIOPOLYMERS

Quantitative Sequence-Activity Model (QSAM): Applying QSAR Strategy to Model and Predict Bioactivity and Function of Peptides, Proteins and Nucleic Acids

(2008) Peng Zhou et al.   Current Computer-Aided Drug Design

Characterization of Domain–Peptide Interaction Interface: A Case Study on the Amphiphysin-1 SH3 Domain

(2008) Tingjun Hou et al.   JOURNAL OF MOLECULAR BIOLOGY

Characterization of Domain-Peptide Interaction Interface

(2008) Tingjun Hou et al.   MOLECULAR & CELLULAR PROTEOMICS