Energy Availability Determines Strategy of Microbial Amino Acid Synthesis in Volatile Fatty Acid–Fed Anaerobic Methanogenic Chemostats

Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community

(2021) Sonja Blasche et al.   Nature Microbiology

Effects of antimony on anaerobic methane oxidization and microbial community in an antimony-contaminated paddy soil: A microcosm study

(2021) Miaomiao Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Different Interspecies Electron Transfer Patterns during Mesophilic and Thermophilic Syntrophic Propionate Degradation in Chemostats

(2020) Ya-Ting Chen et al.   MICROBIAL ECOLOGY

Metabolic dependencies govern microbial syntrophies during methanogenesis in an anaerobic digestion ecosystem

(2020) Xinyu Zhu et al.   Microbiome

Novel Syntrophic Isovalerate-Degrading Bacteria and Their Energetic Cooperation with Methanogens in Methanogenic Chemostats

(2020) Ya-Ting Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Vitamin Biosynthesis by Human Gut Butyrate-Producing Bacteria and Cross-Feeding in Synthetic Microbial Communities

(2020) Eva C. Soto-Martin et al.   mBio

Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses

(2020) Masaru K. Nobu et al.   Microbiome

Contingent evolution of alternative metabolic network topologies determines whether cross-feeding evolves

(2020) Jeroen Meijer et al.   Communications Biology

Selfishness driving reductive evolution shapes interdependent patterns in spatially structured microbial communities

(2020) Miaoxiao Wang et al.   ISME Journal

Functional characteristic of microbial communities in large-scale biotreatment systems of food waste

(2020) Panliang Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

An evolving view of methane metabolism in the Archaea

(2019) Paul N. Evans et al.   NATURE REVIEWS MICROBIOLOGY

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

(2019) Alan R. Pacheco et al.   Nature Communications

Identification of novel potential acetate-oxidizing bacteria in thermophilic methanogenic chemostats by DNA stable isotope probing

(2019) Dan Zheng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bioconversion of coal to methane by microbial communities from soil and from an opencast mine in the Xilingol grassland of northeast China

(2019) Bobo Wang et al.   Biotechnology for Biofuels

The Role of Glutamine in the Complex Interaction between Gut Microbiota and Health: A Narrative Review

(2019) Simone Perna et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Bacterial siderophores in community and host interactions

(2019) Jos Kramer et al.   NATURE REVIEWS MICROBIOLOGY

Methanogenesis

(2018) Zhe Lyu et al.   CURRENT BIOLOGY

The social network of microorganisms — how auxotrophies shape complex communities

(2018) Karsten Zengler et al.   NATURE REVIEWS MICROBIOLOGY

Vitamin B 12 effects on chlorinated methanes-degrading microcosms: Dual isotope and metabolically active microbial populations assessment

(2018) Diana Rodríguez-Fernández et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

(2018) Morgan N. Price et al.   PLoS Genetics

Metabolic capability and in situ activity of microorganisms in an oil reservoir

(2018) Yi-Fan Liu et al.   Microbiome

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae

(2018) Matthew B. Cooper et al.   ISME Journal

Functional biodiversity and plasticity of methanogenic biomass from a full-scale mesophilic anaerobic digester treating nitrogen-rich agricultural wastes

(2018) J. Ruiz-Sánchez et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

(2017) Ali R. Zomorrodi et al.   Nature Communications

Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions

(2017) Valerie Hubalek et al.   mSystems

Beyond the Black Queen Hypothesis

(2016) Alix Mas et al.   ISME Journal

Private benefits and metabolic conflicts shape the emergence of microbial interdependencies

(2015) Sylvie Estrela et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor

(2015) Masaru K Nobu et al.   ISME Journal

Auxotrophy and intrapopulation complementary in the ‘interactome’ of a cultivated freshwater model community

(2015) Sarahi L. Garcia et al.   MOLECULAR ECOLOGY

Networks of energetic and metabolic interactions define dynamics in microbial communities

(2015) Mallory Embree et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

The Role of Microbial Amino Acid Metabolism in Host Metabolism

(2015) Evelien Neis et al.   Nutrients

Syntrophic exchange in synthetic microbial communities

(2014) M. T. Mee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary limits to cooperation in microbial communities

(2014) Nuno M. Oliveira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from theChloroflexiphylum

(2014) Irina A. Rodionova et al.   Environmental Microbiology Reports

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning

(2014) Sascha Krause et al.   Frontiers in Microbiology

The Genotypic View of Social Interactions in Microbial Communities

(2013) Sara Mitri et al.   Annual Review of Genetics

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

(2013) Samay Pande et al.   ISME Journal

Cell-cell contacts confine public goods diffusion inside Pseudomonas aeruginosa clonal microcolonies

(2013) T. Julou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial dilemmas of diffusible public goods

(2013) Benjamin Allen et al.   eLife

Methanosarcina: The rediscovered methanogen for heavy duty biomethanation

(2012) Jo De Vrieze et al.   BIORESOURCE TECHNOLOGY

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Characteristic microbial community of a dry thermophilic methanogenic digester: its long-term stability and change with feeding

(2011) Yue-Qin Tang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage

(2011) Niclas Krakat et al.   BIORESOURCE TECHNOLOGY

Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface

(2011) J. Jeffrey Morris et al.   PLoS One

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

The consequences of genetic drift for bacterial genome complexity

(2009) C.-H. Kuo et al.   GENOME RESEARCH

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

Predictive microbial ecology

(2009) Jizhong Zhou   Microbial Biotechnology

Inhibition of anaerobic digestion process: A review

(2007) Ye Chen et al.   BIORESOURCE TECHNOLOGY