CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach

sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks

(2021) Mengting Niu et al.   PLANT MOLECULAR BIOLOGY

iTTCA-RF: a random forest predictor for tumor T cell antigens

(2021) Shihu Jiao et al.   Journal of Translational Medicine

SgRNA-RF: Identification of SgRNA On-Target Activity With Imbalanced Datasets

(2021) Mengting Niu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

PASSION: an ensemble neural network approach for identifying the binding sites of RBPs on circRNAs

(2020) Cangzhi Jia et al.   BIOINFORMATICS

IDP-Seq2Seq: Identification of Intrinsically Disordered Regions based on Sequence to Sequence Learning

(2020) Yi-Jun Tang et al.   BIOINFORMATICS

DriverML: a machine learning algorithm for identifying driver genes in cancer sequencing studies

(2019) Yi Han et al.   NUCLEIC ACIDS RESEARCH

Identification of Key Genes and Circular RNAs in Human Gastric Cancer

(2019) Shuhong Hao et al.   MEDICAL SCIENCE MONITOR

circDeep: deep learning approach for circular RNA classification from other long non-coding RNA

(2019) Mohamed Chaabane et al.   BIOINFORMATICS

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription

(2019) Rui Xiao et al.   CELL

BioSeq-Analysis2.0: an updated platform for analyzing DNA, RNA and protein sequences at sequence level and residue level based on machine learning approaches

(2019) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

CRIP: predicting circRNA-RBP interaction sites using a codon-based encoding and hybrid deep neural networks

(2019) Kaiming Zhang et al.   RNA

Identifying Cancer-Specific circRNA–RBP Binding Sites Based on Deep Learning

(2019) Zhengfeng Wang et al.   MOLECULES

Identification of drug–target interactions via fuzzy bipartite local model

(2019) Yijie Ding et al.   NEURAL COMPUTING & APPLICATIONS

CircSLNN: Identifying RBP-Binding Sites on circRNAs via Sequence Labeling Neural Networks

(2019) Yuqi Ju et al.   Frontiers in Genetics

Identification of membrane protein types via multivariate information fusion with Hilbert–Schmidt Independence Criterion

(2019) Hao Wang et al.   NEUROCOMPUTING

Predicting RNA–protein binding sites and motifs through combining local and global deep convolutional neural networks

(2018) Xiaoyong Pan et al.   BIOINFORMATICS

Deep Coupled ResNet for Low-Resolution Face Recognition

(2018) Ze Lu et al.   IEEE SIGNAL PROCESSING LETTERS

Feature-Based and String-Based Models for Predicting RNA-Protein Interaction

(2018) Donald Adjeroh et al.   MOLECULES

A novel protein encoded by the circular form of the SHPRH gene suppresses glioma tumorigenesis

(2018) Maolei Zhang et al.   ONCOGENE

Selective recognition of N 4-methylcytosine in DNA by engineered transcription-activator-like effectors

(2018) Preeti Rathi et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The interaction of circRNAs and RNA binding proteins: An important part of circRNA maintenance and function

(2018) Jiankun Zang et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Identification of protein subcellular localization via integrating evolutionary and physicochemical information into Chou’s general PseAAC

(2018) Yinan Shen et al.   JOURNAL OF THEORETICAL BIOLOGY

Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1

(2017) Kotb Abdelmohsen et al.   RNA Biology

Induction of tumor apoptosis through a circular RNA enhancing Foxo3 activity

(2016) William W Du et al.   CELL DEATH AND DIFFERENTIATION

Revealing protein–lncRNA interaction

(2015) Fabrizio Ferrè et al.   BRIEFINGS IN BIOINFORMATICS

The RNA Binding Protein Quaking Regulates Formation of circRNAs

(2015) Simon J. Conn et al.   CELL

Mechanisms of RNA loading into exosomes

(2015) Teresa Janas et al.   FEBS LETTERS

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

(2015) Babak Alipanahi et al.   NATURE BIOTECHNOLOGY

Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity

(2015) Xintian You et al.   NATURE NEUROSCIENCE

CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs

(2015) Dawood B. Dudekula et al.   RNA Biology

circBase: a database for circular RNAs

(2014) Petar Glažar et al.   RNA

RNA-binding proteins in neurological diseases

(2014) HuaLin Zhou et al.   Science China-Life Sciences

GraphProt: modeling binding preferences of RNA-binding proteins

(2014) Daniel Maticzka et al.   GENOME BIOLOGY

Circular RNAs: splicing’s enigma variations

(2013) Matthias W Hentze et al.   EMBO JOURNAL

Normalized Feature Vectors: A Novel Alignment-Free Sequence Comparison Method Based on the Numbers of Adjacent Amino Acids

(2013) De-Shuang Huang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set

(2013) Leyi Wei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics