Linking changes in the soil microbial community to C and N dynamics during crop residue decomposition

Organic mulching positively regulates the soil microbial communities and ecosystem functions in tea plantation

(2020) Shuning Zhang et al.   BMC MICROBIOLOGY

Microbial Communities Associated With Long-Term Tillage and Fertility Treatments in a Corn-Soybean Cropping System

(2020) Ali Y. Srour et al.   Frontiers in Microbiology

The shift of bacterial community composition magnifies over time in response to different sources of soybean residues

(2019) Tengxiang Lian et al.   APPLIED SOIL ECOLOGY

Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings

(2019) Lydie Kerdraon et al.   MICROBIAL ECOLOGY

Response of soil bacterial community to bioaugmentation with a plant residue-immobilized bacterial consortium for crude oil removal

(2019) Kaiyun Tao et al.   CHEMOSPHERE

The contrasting roles of aquatic fungi and oomycetes in the degradation and transformation of polymeric organic matter

(2019) Hossein Masigol et al.   LIMNOLOGY AND OCEANOGRAPHY

Balancing nutrient stoichiometry facilitates the fate of wheat residue‑carbon in physically defined soil organic matter fractions

(2019) Yunying Fang et al.   GEODERMA

Effects of cover crop in an apple orchard on microbial community composition, networks, and potential genes involved with degradation of crop residues in soil

(2018) Wei Zheng et al.   BIOLOGY AND FERTILITY OF SOILS

Anthropogenic N deposition increases soil C storage by reducing the relative abundance of lignolytic fungi

(2018) Elizabeth M. Entwistle et al.   ECOLOGICAL MONOGRAPHS

Microbial mechanisms of carbon priming effects revealed during the interaction of crop residue and nutrient inputs in contrasting soils

(2018) Yunying Fang et al.   GLOBAL CHANGE BIOLOGY

Recycling organic residues in agriculture impacts soil-borne microbial community structure, function and N 2 O emissions

(2018) Afnan Khalil Ahmad Suleiman et al.   SCIENCE OF THE TOTAL ENVIRONMENT

High carbon use efficiency and low priming effect promote soil C stabilization under reduced tillage

(2018) Marie Sauvadet et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Bacterial Community Structure and Microbial Activity in a Traditional Organic Milpa Farming System Under Different Soil Moisture Conditions

(2018) Iván P. Moreno-Espíndola et al.   Frontiers in Microbiology

Genomic resolution of bacterial populations in saccharin and cyclamate degradation

(2018) Yu Deng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Changes in bacterial community composition and soil respiration indicate rapid successions of protist grazers during mineralization of maize crop residues

(2017) Maike Hünninghaus et al.   PEDOBIOLOGIA

Soil Respiration, Microbial Biomass and Nutrient Availability in Soil After Addition of Residues with Adjusted N and P Concentrations

(2017) Trung Ta NGUYEN et al.   PEDOSPHERE

Can changes in litter quality drive soil fauna structure and functions?

(2017) Marie Sauvadet et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term performance of anaerobic digestion for crop residues containing heavy metals and response of microbial communities

(2017) Jongkeun Lee et al.   WASTE MANAGEMENT

Cover Crop Residue Amount and Quality Effects on Soil Organic Carbon Mineralization

(2017) Binod Ghimire et al.   Sustainability

Bacteria as emerging indicators of soil condition

(2016) Syrie M. Hermans et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparing the effects of litter quantity and quality on soil biota structure and functioning: Application to a cultivated soil in Northern France

(2016) Marie Sauvadet et al.   APPLIED SOIL ECOLOGY

Microbial crop residue decomposition dynamics in organic and conventionally managed soils

(2016) Melissa M. Arcand et al.   APPLIED SOIL ECOLOGY

Evolution of microbial community along with increasing solid concentration during high-solids anaerobic digestion of sewage sludge

(2016) Can Liu et al.   BIORESOURCE TECHNOLOGY

Cover crops prevent the deleterious effect of nitrogen fertilisation on bacterial diversity by maintaining the carbon content of ploughed soil

(2016) Julien Verzeaux et al.   GEODERMA

Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

(2016) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis

(2016) Siyang Jian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Enzymatic Strategies and Carbon Use Efficiency of a Litter-Decomposing Fungus Grown on Maize Leaves, Stems, and Roots

(2016) Gwenaëlle Lashermes et al.   Frontiers in Microbiology

High quality residues from cover crops favor changes in microbial community and enhance C and N sequestration

(2016) Ileana Frasier et al.   Global Ecology and Conservation

Properties of Polyhydroxyalkanoate Granules and Bioemulsifiers from Pseudomonas sp. and Burkholderia sp. Isolates Growing on Glucose

(2015) Laís Postai Sacco et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Lignin biochemistry and soil N determine crop residue decomposition and soil priming

(2015) Catherine E. Stewart et al.   BIOGEOCHEMISTRY

Virulence-Associated Enzymes of Cryptococcus neoformans

(2015) Fausto Almeida et al.   EUKARYOTIC CELL

Late stage pine litter decomposition: Relationship to litter N, Mn, and acid unhydrolyzable residue (AUR) concentrations and climatic factors

(2015) B. Berg et al.   FOREST ECOLOGY AND MANAGEMENT

Integrating plant litter quality, soil organic matter stabilization, and the carbon saturation concept

(2015) Michael J. Castellano et al.   GLOBAL CHANGE BIOLOGY

Phylogenetic diversity analyses reveal disparity between fungal and bacterial communities during microbial primary succession

(2015) Shawn P. Brown et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil nitrogen dynamics and crop residues. A review

(2014) Baoqing Chen et al.   Agronomy for Sustainable Development

Carbon and nitrogen mineralization during decomposition of crop residues in a calcareous soil

(2014) J. Moreno-Cornejo et al.   GEODERMA

Divergent Responses of Soil Fungi Functional Groups to Short-term Warming

(2014) Jinbo Xiong et al.   MICROBIAL ECOLOGY

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

How the chemical composition and heterogeneity of crop residue mixtures decomposing at the soil surface affects C and N mineralization

(2014) Marciel Redin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of crop residue incorporation on soil organic carbon and greenhouse gas emissions in European agricultural soils

(2014) T. Lehtinen et al.   SOIL USE AND MANAGEMENT

Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials

(2013) Ayrat M. Ziganshin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Impact of fine litter chemistry on lignocellulolytic enzyme efficiency during decomposition of maize leaf and root in soil

(2013) Bilal Ahmad Zafar Amin et al.   BIOGEOCHEMISTRY

Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect

(2013) Noémie Pascault et al.   ECOSYSTEMS

Rhizosphere stoichiometry: are C : N : P ratios of plants, soils, and enzymes conserved at the plant species-level?

(2013) Colin Bell et al.   NEW PHYTOLOGIST

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Discovery of Microorganisms and Enzymes Involved in High-Solids Decomposition of Rice Straw Using Metagenomic Analyses

(2013) Amitha P. Reddy et al.   PLoS One

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Ecoenzymatic Stoichiometry and Ecological Theory

(2012) Robert L. Sinsabaugh et al.   Annual Review of Ecology Evolution and Systematics

The origin of litter chemical complexity during decomposition

(2012) Kyle Wickings et al.   ECOLOGY LETTERS

Effects of catch crops cultivated for green manure and mineral nitrogen fertilization on soil enzyme activities and chemical properties

(2012) Anna Piotrowska et al.   GEODERMA

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

(2012) M. Francesca Cotrufo et al.   GLOBAL CHANGE BIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Carbon and nitrogen mineralization dynamics in different soils of the tropics amended with legume residues and contrasting soil moisture contents

(2011) Girma Abera et al.   BIOLOGY AND FERTILITY OF SOILS

Lignin content of range plant residues controls N mineralization in soil

(2011) Elaheh Vahdat et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Microbial substrate preference and community dynamics during decomposition of Acer saccharum

(2011) Zachary L. Rinkes et al.   Fungal Ecology

Impact of plant cell wall network on biodegradation in soil: Role of lignin composition and phenolic acids in roots from 16 maize genotypes

(2011) Gaylord Erwan Machinet et al.   SOIL BIOLOGY & BIOCHEMISTRY

Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils?

(2010) Cindy E. Prescott   BIOGEOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

A framework for classifying and quantifying the natural capital and ecosystem services of soils

(2010) Estelle Dominati et al.   ECOLOGICAL ECONOMICS

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

(2010) Jaroslav Šnajdr et al.   FEMS MICROBIOLOGY ECOLOGY

In Situ Dynamics and Spatial Heterogeneity of Soil Bacterial Communities Under Different Crop Residue Management

(2010) Noémie Pascault et al.   MICROBIAL ECOLOGY

In Situ Dynamics of Microbial Communities during Decomposition of Wheat, Rape, and Alfalfa Residues

(2010) Noémie Pascault et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Fungal, bacterial and plant dsDNA contributions to soil total DNA extracted from silty soils under different farming practices: Relationships with chloroform-labile carbon

(2010) Christophe Gangneux et al.   SOIL BIOLOGY & BIOCHEMISTRY

Succession of Bacterial Populations during Plant Residue Decomposition in Rice Field Soil

(2009) J. Rui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Through the eye of the needle: a review of isotope approaches to quantify microbial processes mediating soil carbon balance

(2009) Eric Paterson et al.   NEW PHYTOLOGIST

Significance of organic nitrogen uptake from plant residues by soil microorganisms as affected by carbon and nitrogen availability

(2009) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mineralization dynamics and biochemical properties during initial decomposition of plant and animal residues in soil

(2008) M.L. Cayuela et al.   APPLIED SOIL ECOLOGY

Effect of land use types on decomposition of 14C-labelled maize residue (Zea mays L.)

(2008) Haiqing Chen et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Simple three-pool model accurately describes patterns of long-term litter decomposition in diverse climates

(2008) E. CAROL ADAIR et al.   GLOBAL CHANGE BIOLOGY

Lignin degradation during a laboratory incubation followed by 13C isotope analysis

(2008) H. Bahri et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY