Construction of high-density SNP genetic maps and QTL mapping for dwarf-related traits in Litchi chinensis Sonn

Construction of a SNP-Based High-Density Genetic Map Using Genotyping by Sequencing (GBS) and QTL Analysis of Nut Traits in Chinese Chestnut (Castanea mollissima Blume)

(2018) Feiyang Ji et al.   Frontiers in Plant Science

Overexpression of a Novel Apple NAC Transcription Factor Gene, MdNAC1, Confers the Dwarf Phenotype in Transgenic Apple (Malus domestica)

(2018) Dongfeng Jia et al.   Genes

Differential gene expression between the vigorous and dwarf litchi cultivars based on RNA-Seq transcriptome analysis

(2018) Fuchu Hu et al.   PLoS One

Identification and mapping of fruit rot resistance QTL in American cranberry using GBS

(2017) Guillaume Daverdin et al.   MOLECULAR BREEDING

Genotyping-by-sequencing of pear (Pyrus spp.) accessions unravels novel patterns of genetic diversity and selection footprints

(2017) Satish Kumar et al.   Horticulture Research

Fine mapping of the temperature-sensitive semi-dwarf (Tssd) locus regulating the internode length in peach (Prunus persica)

(2016) Zhenhua Lu et al.   MOLECULAR BREEDING

Morphological diversity within litchi (Litchi chinensis Sonn.) based on leaf and branch traits

(2016) Jiefang Wu et al.   SCIENTIA HORTICULTURAE

A High-Density SNP Genetic Linkage Map and QTL Analysis of Growth-Related Traits in a Hybrid Family of Oysters ( Crassostrea gigas × Crassostrea angulata ) Using Genotyping-by-Sequencing

(2016) Jinpeng Wang et al.   G3-Genes Genomes Genetics

Construction of a high-density genetic map and QTLs mapping for sugars and acids in grape berries

(2015) Jie Chen et al.   BMC PLANT BIOLOGY

Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS)

(2015) Wirulda Pootakham et al.   GENOMICS

A brachytic dwarfism trait (dw ) in peach trees is caused by a nonsense mutation within the gibberellic acid receptor PpeGID1c

(2015) Courtney A. Hollender et al.   NEW PHYTOLOGIST

High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS)

(2015) Subodh Verma et al.   Scientific Reports

Two quantitative trait loci, Dw1 and Dw2, are primarily responsible for rootstock-induced dwarfing in apple

(2015) Toshi M Foster et al.   Horticulture Research

Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch]

(2015) Douglas Gary Bielenberg et al.   PLoS One

High-density genetic linkage map construction and identification of fruit-related QTLs in pear using SNP and SSR markers

(2014) Jun Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Mapping of quantitative trait loci corroborates independent genetic control of apple size and shape

(2014) Yuansheng Chang et al.   SCIENTIA HORTICULTURAE

Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

(2014) Jiangfeng He et al.   Frontiers in Plant Science

Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing

(2013) T. M. Beissinger et al.   GENETICS

Identification of Quantitative Trait Loci (QTLs) for Fruit Quality Traits in Apple

(2013) Sarah M. Potts et al.   PLANT MOLECULAR BIOLOGY REPORTER

Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species

(2011) J. W. VAN OOIJEN   Genetics Research

Genetic mapping of quantitative trait loci controlling fruit size and shape in papaya

(2011) Andrea L. Blas et al.   MOLECULAR BREEDING

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

(2011) W. F. Pfender et al.   THEORETICAL AND APPLIED GENETICS

QTL analysis of fruit quality traits in two peach intraspecific populations and importance of maturity date pleiotropic effect

(2010) Iban Eduardo et al.   Tree Genetics & Genomes

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

SNP identification in crop plants

(2009) Martin W Ganal et al.   CURRENT OPINION IN PLANT BIOLOGY

Overexpression of the NAC transcription factor family gene ANAC036 results in a dwarf phenotype in Arabidopsis thaliana

(2009) Hiroaki Kato et al.   JOURNAL OF PLANT PHYSIOLOGY

Gene mapping in the wild with SNPs: guidelines and future directions

(2008) Jon Slate et al.   GENETICA