Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture
出版年份 2021 全文链接
标题
Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-10-29
DOI
10.1038/s41467-021-26574-4
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Discovery of new vascular disrupting agents based on evolutionarily conserved drug action, pesticide resistance mutations, and humanized yeast
- (2021) Riddhiman K Garge et al. GENETICS
- The structural basis for cohesin–CTCF-anchored loops
- (2020) Yan Li et al. NATURE
- Mechanisms and Functions of Chromosome Compartmentalization
- (2020) Erica M. Hildebrand et al. TRENDS IN BIOCHEMICAL SCIENCES
- Enhancer dependence of cell-type–specific gene expression increases with developmental age
- (2020) Wenqing Cai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML
- (2020) Zuzana Tothova et al. JCI Insight
- Systematic proteomics of endogenous human cohesin reveals an interaction with diverse splicing factors and RNA binding proteins required for mitotic progression
- (2019) Jung-Sik Kim et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Cooler: scalable storage for Hi-C data and other genomically labeled arrays
- (2019) Nezar Abdennur et al. BIOINFORMATICS
- Heterochromatin drives compartmentalization of inverted and conventional nuclei
- (2019) Martin Falk et al. NATURE
- The role of 3D genome organization in development and cell differentiation
- (2019) Hui Zheng et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Disruption of nuclear speckles reduces chromatin interactions in active compartments
- (2019) Shibin Hu et al. Epigenetics & Chromatin
- Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory
- (2019) Alessandro Bertero et al. Nature Communications
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells
- (2019) Yanxiao Zhang et al. NATURE GENETICS
- The Nuclear Pore Complex in Cell Type-Specific Chromatin Structure and Gene Regulation
- (2019) Jiayu Sun et al. TRENDS IN GENETICS
- The Nuclear Matrix Protein SAFB Cooperates with Major Satellite RNAs to Stabilize Heterochromatin Architecture Partially through Phase Separation
- (2019) Xiangru Huo et al. MOLECULAR CELL
- Developing in 3D: the role of CTCF in cell differentiation
- (2018) Rodrigo G. Arzate-Mejía et al. DEVELOPMENT
- Imaging dynamic and selective low-complexity domain interactions that control gene transcription
- (2018) Shasha Chong et al. SCIENCE
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- Matrin 3-dependent neurotoxicity is modified by nucleic acid binding and nucleocytoplasmic localization
- (2018) Ahmed M Malik et al. eLife
- Transcription Elongation Can Affect Genome 3D Structure
- (2018) Sven Heinz et al. CELL
- Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
- (2018) Sergi Cuartero et al. NATURE IMMUNOLOGY
- Matrin-3 is essential for fibroblast growth factor 2-dependent maintenance of neural stem cells
- (2018) Kanako Niimori-Kita et al. Scientific Reports
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- The Gene Ontology Resource: 20 years and still GOing strong
- (2018) NUCLEIC ACIDS RESEARCH
- GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data
- (2018) Riccardo Calandrelli et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Matrin3 binds directly to intronic pyrimidine-rich sequences and controls alternative splicing
- (2017) Yuri Uemura et al. GENES TO CELLS
- The nuclear matrix protein HNRNPU maintains 3D genome architecture globally in mouse hepatocytes
- (2017) Hui Fan et al. GENOME RESEARCH
- YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
- (2017) Jonathan A. Beagan et al. GENOME RESEARCH
- CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression
- (2017) Gang Ren et al. MOLECULAR CELL
- Phase separation drives heterochromatin domain formation
- (2017) Amy R. Strom et al. NATURE
- Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
- (2017) Adam G. Larson et al. NATURE
- 3D structures of individual mammalian genomes studied by single-cell Hi-C
- (2017) Tim J. Stevens et al. NATURE
- Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation
- (2017) Adam J Rubin et al. NATURE GENETICS
- Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
- (2017) François Serra et al. PLoS Computational Biology
- ALS Associated Mutations in Matrin 3 Alter Protein-Protein Interactions and Impede mRNA Nuclear Export
- (2017) Ashley Boehringer et al. Scientific Reports
- Cell-of-Origin-Specific 3D Genome Structure Acquired during Somatic Cell Reprogramming
- (2016) Peter Hugo Lodewijk Krijger et al. Cell Stem Cell
- Decoding ALS: from genes to mechanism
- (2016) J. Paul Taylor et al. NATURE
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB
- (2015) M. B. Coelho et al. EMBO JOURNAL
- Condensin-driven remodelling of X chromosome topology during dosage compensation
- (2015) Emily Crane et al. NATURE
- Understanding multicellular function and disease with human tissue-specific networks
- (2015) Casey S Greene et al. NATURE GENETICS
- Targeted exploration and analysis of large cross-platform human transcriptomic compendia
- (2015) Qian Zhu et al. NATURE METHODS
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- Subcellular Localization of Matrin 3 Containing Mutations Associated with ALS and Distal Myopathy
- (2015) M. Carolina Gallego-Iradi et al. PLoS One
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- The 3D Genome in Transcriptional Regulation and Pluripotency
- (2014) David U. Gorkin et al. Cell Stem Cell
- Required enhancer–matrin-3 network interactions for a homeodomain transcription program
- (2014) Dorota Skowronska-Krawczyk et al. NATURE
- Mutations in the Matrin 3 gene cause familial amyotrophic lateral sclerosis
- (2014) Janel O Johnson et al. NATURE NEUROSCIENCE
- Chromatin state dynamics during blood formation
- (2014) D. Lara-Astiaso et al. SCIENCE
- Generation of Genomic Deletions in Mammalian Cell Lines via CRISPR/Cas9
- (2014) Daniel E. Bauer et al. Jove-Journal of Visualized Experiments
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Ldb1-nucleated transcription complexes function as primary mediators of global erythroid gene activation
- (2013) L. Li et al. BLOOD
- Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System
- (2013) Baohui Chen et al. CELL
- CTCF and Cohesin: Linking Gene Regulatory Elements with Their Targets
- (2013) Matthias Merkenschlager et al. CELL
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation
- (2013) R. N. Plasschaert et al. NUCLEIC ACIDS RESEARCH
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Evolutionarily Repurposed Networks Reveal the Well-Known Antifungal Drug Thiabendazole to Be a Novel Vascular Disrupting Agent
- (2012) Hye Ji Cha et al. PLOS BIOLOGY
- MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets
- (2012) Zhen Shao et al. GENOME BIOLOGY
- A CTCF-independent role for cohesin in tissue-specific transcription
- (2010) D. Schmidt et al. GENOME RESEARCH
- Son Is Essential for Nuclear Speckle Organization and Cell Cycle Progression
- (2010) Alok Sharma et al. MOLECULAR BIOLOGY OF THE CELL
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Analysis and design of RNA sequencing experiments for identifying isoform regulation
- (2010) Yarden Katz et al. NATURE METHODS
- Nuclear Speckles
- (2010) D. L. Spector et al. Cold Spring Harbor Perspectives in Biology
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
- (2009) Eran Eden et al. BMC BIOINFORMATICS
- Matrin 3: Chromosomal distribution and protein interactions
- (2009) Michael J. Zeitz et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Use of in vivo biotinylation to study protein–protein and protein–DNA interactions in mouse embryonic stem cells
- (2009) Jonghwan Kim et al. Nature Protocols
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Identifying functional neighborhoods within the cell nucleus: Proximity analysis of early S-phase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1γ, matrin 3 and SAF-A
- (2008) Kishore S. Malyavantham et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now