Interaction of two MADS-box genes leads to growth phenotype divergence of all-flesh type of tomatoes

All-Flesh Tomato Regulated by Reduced Expression Dosage of AFF Through a Promoter SV Mutation

(2021) Lei Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening

(2021) Yanna Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Roles of SlETR7, a newly discovered ethylene receptor, in tomato plant and fruit development

(2020) Yi Chen et al.   Horticulture Research

Genetic and Metabolic Effects of Ripening Mutations and Vine Detachment on Tomato Fruit Quality

(2019) Sonia Osorio et al.   PLANT BIOTECHNOLOGY JOURNAL

NMR-Based Tissular and Developmental Metabolomics of Tomato Fruit

(2019) Martine Lemaire-Chamley et al.   Metabolites

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

MADS-box genes and crop domestication: the jack of all traits

(2018) Susanne Schilling et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fruit Softening: Revisiting the Role of Pectin

(2018) Duoduo Wang et al.   TRENDS IN PLANT SCIENCE

An AGAMOUS MADS-box gene, SlMBP3, regulates the velocity of placenta liquefaction and seed formation in tomato

(2018) Jianling Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits

(2017) Baowen Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

TomExpress, a unified tomato RNA-Seq platform for visualization of expression data, clustering and correlation networks

(2017) Mohamed Zouine et al.   PLANT JOURNAL

Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions: An integrative study

(2017) Harold Duruflé et al.   PLANT SCIENCE

Identification of Two New Mechanisms That Regulate Fruit Growth by Cell Expansion in Tomato

(2017) Constance Musseau et al.   Frontiers in Plant Science

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Genetic improvement of tomato by targeted control of fruit softening

(2016) Selman Uluisik et al.   NATURE BIOTECHNOLOGY

The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat

(2016) Ignacio Ezquer et al.   PLANT CELL

Transcriptional Activity of the MADS BoxARLEQUIN/TOMATO AGAMOUS-LIKE1Gene Is Required for Cuticle Development of Tomato Fruit

(2015) Estela Giménez et al.   PLANT PHYSIOLOGY

Comprehensive Tissue-Specific Transcriptome Analysis Reveals Distinct Regulatory Programs during Early Tomato Fruit Development

(2015) Richard J. Pattison et al.   PLANT PHYSIOLOGY

Auxin Response Factor SlARF2 Is an Essential Component of the Regulatory Mechanism Controlling Fruit Ripening in Tomato

(2015) Yanwei Hao et al.   PLoS Genetics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Motif-based analysis of large nucleotide data sets using MEME-ChIP

(2014) Wenxiu Ma et al.   Nature Protocols

Transcriptional Regulation of Fruit Ripening by Tomato FRUITFULL Homologs and Associated MADS Box Proteins

(2014) M. Fujisawa et al.   PLANT CELL

Efficient Gene Editing in Tomato in the First Generation Using the Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-Associated9 System

(2014) C. Brooks et al.   PLANT PHYSIOLOGY

Endoreduplication and fruit growth in tomato: evidence in favour of the karyoplasmic ratio theory

(2013) Christian Chevalier et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK

(2013) Rajinder Singh et al.   NATURE

GoldenBraid 2.0: A Comprehensive DNA Assembly Framework for Plant Synthetic Biology

(2013) A. Sarrion-Perdigones et al.   PLANT PHYSIOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Redefining C and D in the Petunia ABC

(2012) Klaas Heijmans et al.   PLANT CELL

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato

(2010) Elodie Mathieu-Rivet et al.   PLANT JOURNAL

Cellular Responses to Auxin: Division versus Expansion

(2010) C. Perrot-Rechenmann   Cold Spring Harbor Perspectives in Biology

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1

(2009) J. Vrebalov et al.   PLANT CELL

Gene and Metabolite Regulatory Network Analysis of Early Developing Fruit Tissues Highlights New Candidate Genes for the Control of Tomato Fruit Composition and Development

(2009) F. Mounet et al.   PLANT PHYSIOLOGY