Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

Rho of Plants GTPases and Cytoskeletal Elements Control Nuclear Positioning and Asymmetric Cell Division during Physcomitrella patens Branching

(2020) Peishan Yi et al.   CURRENT BIOLOGY

Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions

(2020) Jos R. Wendrich et al.   SCIENCE

Mobile PEAR transcription factors integrate positional cues to prime cambial growth

(2019) Shunsuke Miyashima et al.   NATURE

Single-cell RNA sequencing resolves molecular relationships among individual plant cells

(2019) Kook Hui Ryu et al.   PLANT PHYSIOLOGY

Week-long imaging of cell divisions in the Arabidopsis root meristem

(2019) Ramin Rahni et al.   Plant Methods

Dynamics of gene expression in single root cells of A. thaliana

(2019) Ken Jean-Baptiste et al.   PLANT CELL

Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing

(2019) Tom Denyer et al.   DEVELOPMENTAL CELL

Distinct RopGEFs Successively Drive Polarization and Outgrowth of Root Hairs

(2019) Philipp Denninger et al.   CURRENT BIOLOGY

A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root

(2019) Tian-Qi Zhang et al.   Molecular Plant

High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types

(2019) Christine N. Shulse et al.   Cell Reports

CRISPR-TSKO: A Technique for Efficient Mutagenesis in Specific Cell Types, Tissues, or Organs in Arabidopsis

(2019) Ward Decaestecker et al.   PLANT CELL

A single-cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice

(2018) Joakim S. Dahlin et al.   BLOOD

RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments

(2018) Federico Zambelli et al.   NUCLEIC ACIDS RESEARCH

A molecular rheostat adjusts auxin flux to promote root protophloem differentiation

(2018) P. Marhava et al.   NATURE

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

ROP GTPases Structure-Function and Signaling Pathways

(2017) Gil Feiguelman et al.   PLANT PHYSIOLOGY

Root Regeneration Triggers an Embryo-like Sequence Guided by Hormonal Interactions

(2016) Idan Efroni et al.   CELL

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

(2016) Ronan C. O’Malley et al.   CELL

High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation

(2016) Song Li et al.   DEVELOPMENTAL CELL

Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots

(2016) Eun Kyung Yoon et al.   Molecular Plant

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots

(2016) Luca Santuari et al.   PLANT CELL

SPIKE1 Activates ROP GTPase to Modulate Petal Growth and Shape

(2016) Huibo Ren et al.   PLANT PHYSIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

MultiSite Gateway-Compatible Cell Type-Specific Gene-Inducible System for Plants

(2015) Riccardo Siligato et al.   PLANT PHYSIOLOGY

PLETHORA gradient formation mechanism separates auxin responses

(2014) Ari Pekka Mähönen et al.   NATURE

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation

(2014) K. M. Furuta et al.   SCIENCE

GreenGate - A Novel, Versatile, and Efficient Cloning System for Plant Transgenesis

(2013) Athanasios Lampropoulos et al.   PLoS One

Cyclin B1 Destruction Box-Mediated Protein Instability: The Enhanced Sensitivity of Fluorescent-Protein-Based Reporter Gene System

(2013) Chao-Hsun Yang et al.   Biomed Research International

Lineage Specifiers: New Players in the Induction of Pluripotency

(2013) Jian Shu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Transcriptional and Functional Classification of the GOLVEN/ROOT GROWTH FACTOR/CLE-Like Signaling Peptides Reveals Their Role in Lateral Root and Hair Formation

(2012) A. Fernandez et al.   PLANT PHYSIOLOGY

Initiation of Cell Wall Pattern by a Rho- and Microtubule-Driven Symmetry Breaking

(2012) Y. Oda et al.   SCIENCE

ROP GTPases Act with the Receptor-Like Protein PAN1 to Polarize Asymmetric Cell Division in Maize

(2011) John A. Humphries et al.   PLANT CELL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

A SPIKE1 signaling complex controls actin-dependent cell morphogenesis through the heteromeric WAVE and ARP2/3 complexes

(2008) D. Basu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA