Sequencing DNA with nanopores: Troubles and biases

GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

(2020) Patrick Denis Browne et al.   GigaScience

Forensic Autosomal Short Tandem Repeats and Their Potential Association With Phenotype

(2020) Nicole Wyner et al.   Frontiers in Genetics

Long-read assembly of the Brassica napus reference genome Darmor-bzh

(2020) Mathieu Rousseau-Gueutin et al.   GigaScience

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

(2019) Sarah Goldstein et al.   BMC GENOMICS

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies

(2019) Volkan Sevim et al.   Scientific Data

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Hybrid correction of highly noisy long reads using a variable-order de Bruijn graph

(2018) Pierre Morisse et al.   BIOINFORMATICS

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Forensic tri-allelic SNP genotyping using nanopore sequencing

(2018) Senne Cornelis et al.   Forensic Science International-Genetics

Characterization of sequence-specific errors in various next-generation sequencing systems

(2016) Sunguk Shin et al.   Molecular BioSystems

Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads

(2016) Chengxi Ye et al.   PeerJ

Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

(2013) Yen-Chun Chen et al.   PLoS One

Characterizing and measuring bias in sequence data

(2013) Michael G Ross et al.   GENOME BIOLOGY

Summarizing and correcting the GC content bias in high-throughput sequencing

(2012) Yuval Benjamini et al.   NUCLEIC ACIDS RESEARCH

Sequence-specific error profile of Illumina sequencers

(2011) Kensuke Nakamura et al.   NUCLEIC ACIDS RESEARCH