ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments
出版年份 2021 全文链接
标题
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 50, Issue D1, Pages D316-D325
出版商
Oxford University Press (OUP)
发表日期
2021-10-14
DOI
10.1093/nar/gkab996
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Expanded encyclopaedias of DNA elements in the human and mouse genomes
- (2020) Jill E. Moore et al. NATURE
- Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
- (2020) Sanjida H. Rangwala et al. GENOME RESEARCH
- GENCODE 2021
- (2020) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- From ArrayExpress to BioStudies
- (2020) Ugis Sarkans et al. NUCLEIC ACIDS RESEARCH
- GTRD: an integrated view of transcription regulation
- (2020) Semyon Kolmykov et al. NUCLEIC ACIDS RESEARCH
- The UCSC Genome Browser database: 2021 update
- (2020) Jairo Navarro Gonzalez et al. NUCLEIC ACIDS RESEARCH
- FlyBase: updates to the Drosophila melanogaster knowledge base
- (2020) Aoife Larkin et al. NUCLEIC ACIDS RESEARCH
- A map of direct TF–DNA interactions in the human genome
- (2019) Marius Gheorghe et al. NUCLEIC ACIDS RESEARCH
- The Human Transcription Factors
- (2018) Samuel A. Lambert et al. CELL
- ChIP‐Atlas: a data‐mining suite powered by full integration of public ChIP‐seq data
- (2018) Shinya Oki et al. EMBO REPORTS
- Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis
- (2018) Rongbin Zheng et al. NUCLEIC ACIDS RESEARCH
- The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors
- (2017) Michelle M. Kudron et al. GENETICS
- The Encyclopedia of DNA elements (ENCODE): data portal update
- (2017) Carrie A Davis et al. NUCLEIC ACIDS RESEARCH
- ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments
- (2017) Jeanne Chèneby et al. NUCLEIC ACIDS RESEARCH
- A mouse tissue transcription factor atlas
- (2017) Quan Zhou et al. Nature Communications
- The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors
- (2017) Michelle M. Kudron et al. GENETICS
- ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data
- (2016) Ke-Ren Zhou et al. NUCLEIC ACIDS RESEARCH
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- ORegAnno 3.0: a community-driven resource for curated regulatory annotation
- (2015) Robert Lesurf et al. NUCLEIC ACIDS RESEARCH
- The Ensembl Regulatory Build
- (2015) Daniel R Zerbino et al. GENOME BIOLOGY
- Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape
- (2014) Aurélien Griffon et al. NUCLEIC ACIDS RESEARCH
- BRENDA in 2015: exciting developments in its 25th year of existence
- (2014) Antje Chang et al. NUCLEIC ACIDS RESEARCH
- Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways
- (2014) Benoit Ballester et al. eLife
- Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
- (2013) B. J. Raney et al. BIOINFORMATICS
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- NCBI GEO: archive for functional genomics data sets—update
- (2012) Tanya Barrett et al. NUCLEIC ACIDS RESEARCH
- An encyclopedia of mouse DNA elements (Mouse ENCODE)
- (2012) et al. GENOME BIOLOGY
- The Ontology Lookup Service: bigger and better
- (2010) R. Cote et al. NUCLEIC ACIDS RESEARCH
- Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
- (2010) D. Schmidt et al. SCIENCE
- Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
- (2010) et al. SCIENCE
- A census of human transcription factors: function, expression and evolution
- (2009) Juan M. Vaquerizas et al. NATURE REVIEWS GENETICS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started