The European Bioinformatics Institute (EMBL-EBI) in 2021

Reproducibility in systems biology modelling

(2021) Krishna Tiwari et al.   Molecular Systems Biology

Improving reporting standards for polygenic scores in risk prediction studies

(2021) Hannah Wand et al.   NATURE

The Polygenic Score Catalog as an open database for reproducibility and systematic evaluation

(2021) Samuel A. Lambert et al.   NATURE GENETICS

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Highly accurate protein structure prediction for the human proteome

(2021) Kathryn Tunyasuvunakool et al.   NATURE

REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology

(2021) Ugis Sarkans et al.   NATURE METHODS

Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14

(2021) Ivan Anishchenko et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Accurate prediction of protein structures and interactions using a three-track neural network

(2021) Minkyung Baek et al.   SCIENCE

R2DT is a framework for predicting and visualising RNA secondary structure using templates

(2021) Blake A. Sweeney et al.   Nature Communications

Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model

(2021) Mathias Hammer et al.   NATURE METHODS

The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data

(2021) Nishadi H De Silva et al.   NUCLEIC ACIDS RESEARCH

The European Variation Archive: a FAIR resource of genomic variation for all species

(2021) Timothe Cezard et al.   NUCLEIC ACIDS RESEARCH

Complex Portal 2022: new curation frontiers

(2021) Birgit H M Meldal et al.   NUCLEIC ACIDS RESEARCH

Expression Atlas update: gene and protein expression in multiple species

(2021) Pablo Moreno et al.   NUCLEIC ACIDS RESEARCH

The reactome pathway knowledgebase 2022

(2021) Marc Gillespie et al.   NUCLEIC ACIDS RESEARCH

The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences

(2021) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

The European Genome-phenome Archive in 2021

(2021) Mallory Ann Freeberg et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2022

(2021) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

Ten simple rules for making training materials FAIR

(2020) Leyla Garcia et al.   PLoS Computational Biology

The European Bioinformatics Institute: empowering cooperation in response to a global health crisis

(2020) Gaia Cantelli et al.   NUCLEIC ACIDS RESEARCH

Rfam 14: expanded coverage of metagenomic, viral and microRNA families

(2020) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

From trainees to trainers to instructors: Sustainably building a national capacity in bioinformatics training

(2019) Annette McGrath et al.   PLoS Computational Biology

The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences

(2019) Charles E Cook et al.   NUCLEIC ACIDS RESEARCH

The development and application of bioinformatics core competencies to improve bioinformatics training and education

(2018) Nicola Mulder et al.   PLoS Computational Biology

BioSamples database: an updated sample metadata hub

(2018) Mélanie Courtot et al.   NUCLEIC ACIDS RESEARCH

EMPIAR: a public archive for raw electron microscopy image data

(2016) Andrii Iudin et al.   NATURE METHODS

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

EMDataBank unified data resource for 3DEM

(2015) Catherine L. Lawson et al.   NUCLEIC ACIDS RESEARCH