Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar

The IbeA Invasin of Adherent-Invasive Escherichia coli Mediates Interaction with Intestinal Epithelia and Macrophages

(2015) Roberto J. Cieza et al.   INFECTION AND IMMUNITY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Two Functional Type VI Secretion Systems in Avian Pathogenic Escherichia coli Are Involved in Different Pathogenic Pathways

(2014) Jiale Ma et al.   INFECTION AND IMMUNITY

Inflammation-associated Adherent-invasive Escherichia coli Are Enriched in Pathways for Use of Propanediol and Iron and M-cell Translocation

(2014) Belgin Dogan et al.   INFLAMMATORY BOWEL DISEASES

Type VI secretion system effectors: poisons with a purpose

(2014) Alistair B. Russell et al.   NATURE REVIEWS MICROBIOLOGY

Western diet induces dysbiosis with increasedE coliin CEABAC10 mice,alters host barrier function favouring AIEC colonisation

(2013) Margarita Martinez-Medina et al.   GUT

Genetic diversity and features analysis of type VI secretion systems loci in avian pathogenic Escherichia coli by wide genomic scanning

(2013) Jiale Ma et al.   INFECTION GENETICS AND EVOLUTION

The type 1 pili regulator gene fimX and pathogenicity island PAI-X as molecular markers of uropathogenic Escherichia coli

(2013) S. L. Bateman et al.   MICROBIOLOGY-SGM

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Point Mutations in FimH Adhesin of Crohn's Disease-Associated Adherent-Invasive Escherichia coli Enhance Intestinal Inflammatory Response

(2013) Nicolas Dreux et al.   PLoS Pathogens

Adherent-invasiveEscherichia coliblocks interferon-γ-induced signal transducer and activator of transcription (STAT)-1 in human intestinal epithelial cells

(2012) Juan C. Ossa et al.   CELLULAR MICROBIOLOGY

Microevolution infimHGene of Mucosa-Associated Escherichia coli Strains Isolated from Pediatric Patients with Inflammatory Bowel Disease

(2012) Valerio Iebba et al.   INFECTION AND IMMUNITY

Epigenetic regulation of the nitrosative stress response and intracellular macrophage survival by extraintestinal pathogenic Escherichia coli

(2012) Stacey L. Bateman et al.   MOLECULAR MICROBIOLOGY

Type VI secretion requires a dynamic contractile phage tail-like structure

(2012) M. Basler et al.   NATURE

Type 6 Secretion Dynamics Within and Between Bacterial Cells

(2012) M. Basler et al.   SCIENCE

PGAP: pan-genomes analysis pipeline

(2011) Yongbing Zhao et al.   BIOINFORMATICS

Analysis of Escherichia coli Isolated from Patients Affected by Crohn’s Disease

(2011) Tiziana Raso et al.   CURRENT MICROBIOLOGY

Characterization of IcmF of the type VI secretion system in an avian pathogenic Escherichia coli (APEC) strain

(2011) F. de Pace et al.   MICROBIOLOGY-SGM

Intestinal homeostasis and its breakdown in inflammatory bowel disease

(2011) Kevin J. Maloy et al.   NATURE

Genetics and pathogenesis of inflammatory bowel disease

(2011) Bernard Khor et al.   NATURE

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions

(2010) Chad Laing et al.   BMC BIOINFORMATICS

Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes

(2010) John HE Nash et al.   BMC GENOMICS

Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease

(2010) Shadi Sepehri et al.   INFLAMMATORY BOWEL DISEASES

E. coli-mediated gut inflammation in genetically predisposed Crohn's disease patients

(2010) N. Barnich et al.   PATHOLOGIE BIOLOGIE

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Adherent-invasive Escherichia coli, strain LF82 disrupts apical junctional complexes in polarized epithelia

(2009) Eytan Wine et al.   BMC MICROBIOLOGY

A phylogenetic group of Escherichia coli associated with active left-sided Inflammatory Bowel Disease

(2009) Andreas M Petersen et al.   BMC MICROBIOLOGY

Phylogenetic analysis of inflammatory bowel disease associated Escherichia coli and the fimH virulence determinant

(2009) Shadi Sepehri et al.   INFLAMMATORY BOWEL DISEASES

Similarity and Divergence among Adherent-Invasive Escherichia coli and Extraintestinal Pathogenic E. coli Strains

(2009) M. Martinez-Medina et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Inflammatory Bowel Disease

(2009) Clara Abraham et al.   NEW ENGLAND JOURNAL OF MEDICINE

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Abnormalities in the handling of intracellular bacteria in Crohn’s disease: a link between infectious etiology and host genetic susceptibility

(2008) Anne-Lise Glasser et al.   ARCHIVUM IMMUNOLOGIAE ET THERAPIAE EXPERIMENTALIS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The bacterial type VI secretion machine: yet another player for protein transport across membranes

(2008) A. Filloux et al.   MICROBIOLOGY-SGM

Escherichia coli isolated from a Crohn's disease patient adheres, invades, and induces inflammatory responses in polarized intestinal epithelial cells

(2007) Tonyia Eaves-Pyles et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY