Article
Multidisciplinary Sciences
Hu Fang, Xiaoqiang Zhu, Haocheng Yang, Jieun Oh, Jayne A. Barbour, Jason W. H. Wong
Summary: This study identified a previously unknown function of DNA mismatch repair (MMR) in protecting genomes from 5-methylcytosine (5mC) deamination-induced mutations in human cancers. The mutational signatures in MMR-deficient cancers are associated with different MMR protein deficiencies, mainly due to unrepaired mismatches caused by 5mC deamination. The repair of 5mC deamination damage in cancers with biallelic loss of MBD4 DNA glycosylase is strongly linked to H3K36me3 chromatin, implicating MutS. as an essential factor.
Article
Biochemistry & Molecular Biology
Alexandra Vaisman, Krystian Lazowski, Martin A. M. Reijns, Erin Walsh, John P. McDonald, Kristiniana C. Moreno, Dominic R. Quiros, Marlen Schmidt, Harald Kranz, Wei Yang, Karolina Makiela-Dzbenska, Roger Woodgate
Summary: The Escherichia coli dnaE gene encodes the alpha-catalytic subunit of DNA polymerase III, with the study focusing on the role of residues H760 and S759 in maintaining genome stability. Out of 38 mutants created, only nine were successfully sub-cloned, with three having substitutions at H760 and six having substitutions at S759. Further characterization revealed altered phenotypes in terms of deoxyribonucleotide base selectivity and ribonucleotide discrimination for certain alleles.
MOLECULAR MICROBIOLOGY
(2021)
Article
Immunology
Julius Beer, Stefania Crotta, Angele Breithaupt, Annette Ohnemus, Jan Becker, Benedikt Sachs, Lisa Kern, Miriam Llorian, Nadine Ebert, Fabien Labroussaa, Tran Thi Nhu Thao, Bettina Salome Trueeb, Joerg Jores, Volker Thiel, Martin Beer, Jonas Fuchs, Georg Kochs, Andreas Wack, Martin Schwemmle, Daniel Schnepf
Summary: The study reveals that advanced age is correlated with severe COVID-19 due to impaired immune response, specifically the diminished IFN-gamma response and excessive virus replication. It suggests that immunotherapy combining IFN-gamma and IFN-lambda could benefit highly vulnerable individuals.
JOURNAL OF EXPERIMENTAL MEDICINE
(2022)
Article
Biology
Olivia G. Dobbs, Rosemary H. C. Wilson, Katherine Newling, Justin F. -X. Ainscough, Dawn Coverley
Summary: CIZ1 is involved in chromatin condensation during quiescence entry, and its loss leads to genome instability and potential diseases. The absence of CIZ1 results in compromised nuclear condensation and perturbation of genes related to chromatin condensation and DNA repair.
Article
Biochemistry & Molecular Biology
Benjamin B. Morris, Jason P. Smith, Qi Zhang, Zhijie Jiang, Oliver A. Hampton, Michelle L. Churchman, Susanne M. Arnold, Dwight H. Owen, Jhanelle E. Gray, Patrick M. Dillon, Hatem H. Soliman, Daniel G. Stover, Howard Colman, Arnab Chakravarti, Kenneth H. Shain, Ariosto S. Silva, John L. Villano, Michael A. Vogelbaum, Virginia F. Borges, Wallace L. Akerley, Ryan D. Gentzler, Richard D. Hall, Cindy B. Matsen, C. M. Ulrich, Andrew R. Post, David A. Nix, Eric A. Singer, James M. Larner, Peter Todd Stukenberg, David R. Jones, Marty W. Mayo
Summary: This study identified a new pan-cancer class of tumors, replicative instability (RIN), characterized by intra-chromosomal gene-level gain and loss events at replication stress sensitive genome sites. RIN was found to drive therapy resistance and distant metastases across multiple tumor types, indicating its significant importance in cancer research.
Article
Oncology
Xueqing Zou, Gene Ching Chiek Koh, Arjun Scott Nanda, Andrea Degasperi, Katie Urgo, Theodoros I. Roumeliotis, Chukwuma A. Agu, Cherif Badja, Sophie Momen, Jamie Young, Tauanne Dias Amarante, Lucy Side, Glen Brice, Vanesa Perez-Alonso, Daniel Rueda, Celine Gomez, Wendy Bushell, Rebecca Harris, Jyoti S. Choudhary, John C. Ambrose, Prabhu Arumugam, Emma L. Baple, Marta Bleda, Freya Boardman-Pretty, Jeanne M. Boissiere, Christopher R. Boustred, Helen Brittain, Mark J. Caulfield, Georgia C. Chan, Clare E. H. Craig, Louise C. Daugherty, Anna de Burca, Andrew Devereau, Greg Elgar, Rebecca E. Foulger, Tom Fowler, Pedro Furio-Tari, Adam Giess, Joanne M. Hackett, Dina Halai, Angela Hamblin, Shirley Henderson, James E. Holman, Tim J. P. Hubbard, Kristina Ibanez, Rob Jackson, Louise J. Jones, Dalia Kasperaviciute, Melis Kayikci, Athanasios Kousathanas, Lea Lahnstein, Kay Lawson, Sarah E. A. Leigh, Ivonne U. S. Leong, Javier F. Lopez, Fiona Maleady-Crowe, Joanne Mason, Ellen M. McDonagh, Loukas Moutsianas, Michael Mueller, Nirupa Murugaesu, Anna C. Need, Pter O'Donovan, Chris A. Odhams, Andrea Orioli, Christine Patch, Mariana Buongermino Pereira, Daniel Perez-Gil, Dimitris Polychronopoulos, John Pullinger, Tahrima Rahim, Augusto Rendon, Pablo Riesgo-Ferreiro, Tim Rogers, Mina Ryten, Kevin Savage, Kushmita Sawant, Richard H. Scott, Afshan Siddiq, Alexander Sieghart, Damian Smedley, Katherine R. Smith, Samuel C. Smith, Alona Sosinsky, William Spooner, Helen E. Stevens, Alexander Stuckey, Razvan Sultana, Melanie Tanguy, Ellen R. A. Thomas, Simon R. Thompson, Carolyn Tregidgo, Arianna Tucci, Emma Walsh, Sarah A. Watters, Matthew J. Welland, Eleanor Williams, Katarzyna Witkowska, Suzanne M. Wood, Magdalena Zarowiecki, Josef Jiricny, William C. Skarnes, Serena Nik-Zainal
Summary: The study investigates the impact of knockout of 42 human DNA repair genes on mutational patterns using CRISPR-Cas9 and whole-genome sequencing. A clinically relevant tool to detect mismatch repair-deficient tumors was developed and validated for enhanced detection of MMR-deficient tumors with implications for immunotherapy responsiveness.
Article
Cell Biology
Marit E. Geijer, Di Zhou, Kathiresan Selvam, Barbara Steurer, Chirantani Mukherjee, Bastiaan Evers, Simona Cugusi, Marvin van Toorn, Melanie van der Woude, Roel C. Janssens, Yannick P. Kok, Wenzhi Gong, Anja Raams, Calvin S. Y. Lo, Joyce H. G. Lebbink, Bart Geverts, Dalton A. Plummer, Karel Bezstarosti, Arjan F. Theil, Richard Mitter, Adriaan B. Houtsmuller, Wim Vermeulen, Jeroen A. A. Demmers, Shisheng Li, Marcel A. T. M. van Vugt, Hannes Lans, Rene Bernards, Jesper Q. Svejstrup, Arnab Ray Chaudhuri, John J. Wyrick, Jurgen A. Marteijn
Summary: Correct transcription is crucial for life, and cells have intricate mechanisms to counteract transcription-blocking lesions. The elongation factor ELOF1 plays an important role in the transcription stress response following DNA damage, protecting the transcription machinery via two distinct mechanisms.
NATURE CELL BIOLOGY
(2021)
Article
Multidisciplinary Sciences
Emmanuel Compe, Evanthia Pangou, Nicolas Le May, Clemence Elly, Cathy Braun, Ji-Hyun Hwang, Frederic Coin, Izabela Sumara, Kwang-Wook Choi, Jean-Marc Egly
Summary: The helicase XPD can localize with the motor protein Eg5 to mitotic spindles and the midbodies of human cells independently of other TFIIH subunits. The partnership between XPD and Eg5 is regulated by phosphorylation of Eg5/T926 by CDK1 and Eg5/S1033 by NEK6. This phosphorylation is required for Eg5 localization, checkpoint activation, and chromosome segregation in mitosis.
Review
Cell Biology
Ming Tang, Emma Bolderson, Kenneth J. O'Byrne, Derek J. Richard
Summary: Hypoxia is associated with poor prognosis in cancer due to enhanced tumor malignancy and therapeutic resistance. The aggressiveness of tumors partially stems from hypoxia-induced genomic instability. Understanding how tumor hypoxia induces genomic instability is crucial for improving cancer therapeutics.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Article
Cell Biology
Jessica S. Williams, Jessica L. Wojtaszek, Denise C. Appel, Juno Krahn, Bret D. Wallace, Evan Walsh, Thomas A. Kunkel, R. Scott Williams
Summary: This study investigates the mechanism of how Apn2 engages and processes DNA damage. The results show that Apn2 frays and cleaves DNA termini through a wedging mechanism. In a background with ribonucleotide excision repair defects, APN2 deletion and DNA-wedge mutant strains show mutator phenotypes, cell growth defects, and sensitivity to genotoxic stress. These findings reveal the important role of Apn2 nuclease activity in mitigating mutagenic and genome instability phenotypes caused by Top1 incision.
Article
Multidisciplinary Sciences
Larissa Milano, Clara F. Charlier, Rafaela Andreguetti, Thomas Cox, Eleanor Healing, Marcos P. Thome, Ruan M. Elliott, Leona D. Samson, Jean-Yves Masson, Guido Lenz, Joao Antonio P. Henriques, Axel Nohturfft, Lisiane B. Meira
Summary: The study investigates the effects of the alkylating agent MMS on gene expression in mouse liver using mice deficient in the enzyme Aag. It shows that Aag deficiency leads to a reduction in the cellular stress response induced by alkylation.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Review
Biochemistry & Molecular Biology
Rebecca Linke, Michaela Limmer, Stefan A. Juranek, Annkristin Heine, Katrin Paeschke
Summary: In summary, G-quadruplex DNA structures play important roles in cellular function, but can also induce genome instability leading to tumorigenesis and genetic disorders. By interacting with DNA repair proteins and ligands, G4 structures can block specific DNA repair pathways.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Plant Sciences
Xin-Yu Li, Xuan Cui, Chang-Quan Xie, Yong Wu, Tang Song, Jin-Di He, Ji Feng, Qian-Ru Cui, Jin-Lian Bin, Qiu-Yun Li, Cheng Xiao, Jing-Huan Deng, Guo-Dong Lu, Jing Zhou
Summary: This study investigates the molecular mechanisms by which Andro and its effects on HCC cell death. It is found that Andro induces HCC cell death through DNA damage and cell cycle arrest, with p53 and p62 playing important roles in this process. Additionally, Andro-induced p62 aggregation leads to the degradation of proteins involved in DNA damage repair. These findings provide valuable insights for repurposing Andro for HCC treatment, regardless of the presence of functional p53.
Review
Oncology
Takayuki Saitoh, Tsukasa Oda
Summary: Multiple myeloma is an incurable plasma cell malignancy characterized by genomic instability. The tumor microenvironment and abnormal DNA repair function play a role in genetic instability in this disease. Factors in the tumor microenvironment, such as inflammation and hypoxia, significantly influence DNA repair pathways in multiple myeloma.
Review
Oncology
Elisa Taiana, Maria Eugenia Gallo Cantafio, Vanessa Katia Favasuli, Cecilia Bandini, Giuseppe Viglietto, Roberto Piva, Antonino Neri, Nicola Amodio
Summary: Genomic instability (GI) plays a critical role in the pathobiology of multiple myeloma (MM) by promoting the acquisition of tumor hallmarks. Non-coding RNA molecules are emerging as key players in GI pathways in MM, providing new opportunities for therapeutic interventions. The dysregulation of non-coding RNAs in MM adds another layer of complexity to understanding the molecular determinants of GI in this disease.
Article
Multidisciplinary Sciences
Liqing Tian, Ying Shao, Stephanie Nance, Jinjun Dang, Beisi Xu, Xiaotu Ma, Yongjin Li, Bensheng Ju, Li Dong, Scott Newman, Xin Zhou, Patrick Schreiner, Elizabeth Tseng, Ting Hon, Meredith Ashby, Chunliang Li, John Easton, Tanja A. Gruber, Jinghui Zhang
NATURE COMMUNICATIONS
(2019)
Article
Biology
Brandon R. Lowe, Rajesh K. Yadav, Ryan A. Henry, Patrick Schreiner, Atsushi Matsuda, Alfonso G. Fernandez, David Finkelstein, Margaret Campbell, Satish Kallappagoudar, Carolyn M. Jablonowski, Andrew J. Andrews, Yasushi Hiraoka, Janet F. Partridge
Summary: The study highlights the varied phenotypic effects and impact on DNA repair caused by mutations in different types of H3 histones, indicating the complexity associated with substitutions at a single residue in H3. Analysis using genetically tractable systems demonstrates the utility of such approaches in studying these mutations.
Article
Biochemistry & Molecular Biology
Emilia Komulainen, Jack Badman, Stephanie Rey, Stuart Rulten, Limei Ju, Kate Fennell, Ilona Kalasova, Kristyna Ilievova, Peter J. McKinnon, Hana Hanzlikova, Kevin Staras, Keith W. Caldecott
Summary: The study demonstrates that high activity of DNA strand break sensor protein Parp1 in mice with Xrcc1 deletion can result in lethal seizures, which can be prevented and lifespan extended by inhibiting or deleting Parp1. This highlights PARP inhibition as a potential therapeutic approach for hereditary neurological diseases.
Article
Multidisciplinary Sciences
Casey G. Langdon, Katherine E. Gadek, Matthew R. Garcia, Myron K. Evans, Kristin B. Reed, Madeline Bush, Jason A. Hanna, Catherine J. Drummond, Matthew C. Maguire, Patrick J. Leavey, David Finkelstein, Hongjian Jin, Patrick A. Schreiner, Jerold E. Rehg, Mark E. Hatley
Summary: PTEN promoter hypermethylation is nearly universal and PTEN copy number loss affects around 25% of fusion-negative rhabdomyosarcoma (FN-RMS). Deletion of Pten in a mouse model of FN-RMS leads to less differentiated tumors resembling human embryonal RMS, with activation of the PI3K pathway but no increase in mTOR activity. Pten-deleted tumors show increased expression of transcription factors important in neural and skeletal muscle development, with Pax7 deletion reversing the effects of Pten loss and driving smooth muscle differentiation.
NATURE COMMUNICATIONS
(2021)
Article
Biology
Xiaokang Wang, Wojciech Rosikiewicz, Yurii Sedkov, Tanner Martinez, Baranda S. Hansen, Patrick Schreiner, Jesper Christensen, Beisi Xu, Shondra M. Pruett-Miller, Kristian Helin, Hans-Martin Herz
Summary: This study identifies PROSER1 as a regulator of TET2 O-GlcNAcylation and its role in DNA demethylation. PROSER1 mediates the interaction between OGT and TET2, promoting TET2 O-GlcNAcylation and protein stability. Furthermore, PROSER1 colocalizes with UTX, TET1/2, and OGT on many genomic elements, suggesting its involvement in regulating chromatin-associated proteins via OGT-mediated O-GlcNAcylation.
LIFE SCIENCE ALLIANCE
(2022)
Article
Oncology
Seungjae Lee, Ti-Cheng Chang, Patrick Schreiner, Yiping Fan, Neeraj Agarwal, Charles Owens, Reinhard Dummer, John M. Kirkwood, Raymond L. Barnhill, Dan Theodorescu, Gang Wu, Armita Bahrami
Summary: The study showed that in wild-type cancer cells, there were significant methylation differences in different regions of the TERT promoter between the two epialleles. Decitabine therapy was able to reduce methylation in the core and proximal regions of the promoter, leading to reactivation of the silent allele.
Article
Oncology
Patrick Schreiner, Mireya Paulina Velasquez, Stephen Gottschalk, Jinghui Zhang, Yiping Fan
Summary: CAR-T cell therapy has been successful in treating B-ALL by targeting high expression, tumor-specific antigens. However, identifying suitable target antigens for other cancers like AML remains challenging due to the expression of current targeted antigens on HPCs or mature myeloid cells.
Article
Medicine, Research & Experimental
Brooke Prinzing, Patrick Schreiner, Matthew Bell, Yiping Fan, Giedre Krenciute, Stephen Gottschalk
Article
Biotechnology & Applied Microbiology
Alexie Papanicolaou, Marc F. Schetelig, Peter Arensburger, Peter W. Atkinson, Joshua B. Benoit, Kostas Bourtzis, Pedro Castanera, John P. Cavanaugh, Hsu Chao, Christopher Childers, Ingrid Curril, Huyen Dinh, HarshaVardhan Doddapaneni, Amanda Dolan, Shannon Dugan, Markus Friedrich, Giuliano Gasperi, Scott Geib, Georgios Georgakilas, Richard A. Gibbs, Sarah D. Giers, Ludvik M. Gomulski, Miguel Gonzalez-Guzman, Ana Guillem-Amat, Yi Han, Artemis G. Hatzigeorgiou, Pedro Hernandez-Crespo, Daniel S. T. Hughes, Jeffery W. Jones, Dimitra Karagkouni, Panagiota Koskinioti, Sandra L. Lee, Anna R. Malacrida, Mose Manni, Kostas Mathiopoulos, Angela Meccariello, Shwetha C. Murali, Terence D. Murphy, Donna M. Muzny, Georg Oberhofer, Felix Ortego, Maria D. Paraskevopoulou, Monica Poelchau, Jiaxin Qu, Martin Reczko, Hugh M. Robertson, Andrew J. Rosendale, Andrew E. Rosselot, Giuseppe Saccone, Marco Salvemini, Grazia Savini, Patrick Schreiner, Francesca Scolari, Paolo Siciliano, Sheina B. Sim, George Tsiamis, Enric Urena, Ioannis S. Vlachos, John H. Werren, Ernst A. Wimmer, Kim C. Worley, Antigone Zacharopoulou, Stephen Richards, Alfred M. Handler