High-resolution in situ structure determination by cryo-electron tomography and subtomogram averaging using emClarity

Multi-particle cryo-EM refinement with M visualizes ribosome-antibiotic complex at 3.5 Å in cells

(2021) Dimitry Tegunov et al.   NATURE METHODS

CryoET structures of immature HIV Gag reveal six-helix bundle

(2021) Luiza Mendonça et al.   Communications Biology

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly

(2020) Robert A. Dick et al.   PLoS Pathogens

Molecular architecture of the luminal ring of the Xenopus laevis nuclear pore complex

(2020) Yanqing Zhang et al.   CELL RESEARCH

An asymmetric sheath controls flagellar supercoiling and motility in the leptospira spirochete

(2020) Kimberley H Gibson et al.   eLife

The In Situ Structure of Parkinson’s Disease-Linked LRRK2

(2020) Reika Watanabe et al.   CELL

Subdomain cryo-EM structure of nodaviral replication protein A crown complex provides mechanistic insights into RNA genome replication

(2020) Nuruddin Unchwaniwala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The promise and the challenges of cryo‐electron tomography

(2020) Martin Turk et al.   FEBS LETTERS

The Architecture of Inactivated SARS-CoV-2 with Postfusion Spikes Revealed by Cryo-EM and Cryo-ET

(2020) Chuang Liu et al.   STRUCTURE

Structure of the Ty3/Gypsy retrotransposon capsid and the evolution of retroviruses

(2019) Svetlana O. Dodonova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in cryo-electron tomography and subtomogram averaging and classification

(2019) Peijun Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

In Situ Structure of an Intact Lipopolysaccharide-Bound Bacterial Surface Layer

(2019) Andriko von Kügelgen et al.   CELL

cisTEM, user-friendly software for single-particle image processing

(2018) Timothy Grant et al.   eLife

emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging

(2018) Benjamin A. Himes et al.   NATURE METHODS

Structure and architecture of immature and mature murine leukemia virus capsids

(2018) Kun Qu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4 Å

(2017) Beata Turoňová et al.   JOURNAL OF STRUCTURAL BIOLOGY

Automated tilt series alignment and tomographic reconstruction in IMOD

(2017) David N. Mastronarde et al.   JOURNAL OF STRUCTURAL BIOLOGY

Convolutional neural networks for automated annotation of cellular cryo-electron tomograms

(2017) Muyuan Chen et al.   NATURE METHODS

Guidelines for using Bsoft for high resolution reconstruction and validation of biomolecular structures from electron micrographs

(2017) J. Bernard Heymann   PROTEIN SCIENCE

The structure of the COPI coat determined within the cell

(2017) Yury S Bykov et al.   eLife

Alignment algorithms and per-particle CTF correction for single particle cryo-electron tomography

(2016) Jesús G. Galaz-Montoya et al.   JOURNAL OF STRUCTURAL BIOLOGY

Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION

(2016) Tanmay A M Bharat et al.   Nature Protocols

An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation

(2016) Florian K. M. Schur et al.   SCIENCE

Visualizing the molecular sociology at the HeLa cell nuclear periphery

(2016) J. Mahamid et al.   SCIENCE

The structure and flexibility of conical HIV-1 capsids determined within intact virions

(2016) Simone Mattei et al.   SCIENCE

Single particle tomography in EMAN2

(2015) Jesús G. Galaz-Montoya et al.   JOURNAL OF STRUCTURAL BIOLOGY

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Advances in Single-Particle Electron Cryomicroscopy Structure Determination applied to Sub-tomogram Averaging

(2015) Tanmay A.M. Bharat et al.   STRUCTURE

CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling

(2015) C Keith Cassidy et al.   eLife

Cryo-electron tomography: The challenge of doing structural biology in situ

(2013) Vladan Lučić et al.   JOURNAL OF CELL BIOLOGY

The Structure of Herpesvirus Fusion Glycoprotein B-Bilayer Complex Reveals the Protein-Membrane and Lateral Protein-Protein Interaction

(2013) Ulrike E. Maurer et al.   STRUCTURE

Dynamo: A flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments

(2012) Daniel Castaño-Díez et al.   JOURNAL OF STRUCTURAL BIOLOGY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Prevention of overfitting in cryo-EM structure determination

(2012) Sjors H W Scheres et al.   NATURE METHODS

Clustering and variance maps for cryo-electron tomography using wedge-masked differences

(2011) John M. Heumann et al.   JOURNAL OF STRUCTURAL BIOLOGY

PyTom: A python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis

(2011) Thomas Hrabe et al.   JOURNAL OF STRUCTURAL BIOLOGY

Classification of cryo-electron sub-tomograms using constrained correlation

(2007) Friedrich Förster et al.   JOURNAL OF STRUCTURAL BIOLOGY