Prolonged activation of nasal immune cell populations and development of tissue-resident SARS-CoV-2-specific CD8+ T cell responses following COVID-19

Discriminating mild from critical COVID-19 by innate and adaptive immune single-cell profiling of bronchoalveolar lavages

(2021) Els Wauters et al.   CELL RESEARCH

Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia

(2021) Rogan A. Grant et al.   NATURE

Major alterations in the mononuclear phagocyte landscape associated with COVID-19 severity

(2021) Egle Kvedaraite et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection

(2021) Jennifer M. Dan et al.   SCIENCE

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19

(2021) Peter A. Szabo et al.   IMMUNITY

Identification and characterization of a SARS-CoV-2 specific CD8+ T cell response with immunodominant features

(2021) Anastasia Gangaev et al.   Nature Communications

Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19

(2021) Carly G.K. Ziegler et al.   CELL

Distinct systemic and mucosal immune responses during acute SARS-CoV-2 infection

(2021) Nikaïa Smith et al.   NATURE IMMUNOLOGY

Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals

(2020) Alba Grifoni et al.   CELL

Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19

(2020) Mingfeng Liao et al.   NATURE MEDICINE

Reduction and Functional Exhaustion of T Cells in Patients With Coronavirus Disease 2019 (COVID-19)

(2020) Bo Diao et al.   Frontiers in Immunology

Acute SARS-CoV-2 Infection Impairs Dendritic Cell and T Cell Responses

(2020) Runhong Zhou et al.   IMMUNITY

Longitudinal analyses reveal immunological misfiring in severe COVID-19

(2020) Carolina Lucas et al.   NATURE

COVID-19 severity correlates with airway epithelium–immune cell interactions identified by single-cell analysis

(2020) Robert Lorenz Chua et al.   NATURE BIOTECHNOLOGY

Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients

(2020) Jérôme Hadjadj et al.   SCIENCE

Unbiased screens show CD8+ T cells of COVID-19 patients recognize shared epitopes in SARS-CoV-2, most of which are not located in the Spike protein

(2020) Andrew P. Ferretti et al.   IMMUNITY

Broad and strong memory CD4+ and CD8+ T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19

(2020) Yanchun Peng et al.   NATURE IMMUNOLOGY

Natural killer cell immunotypes related to COVID-19 disease severity

(2020) Christopher Maucourant et al.   Science Immunology

Longitudinal immune profiling reveals key myeloid signatures associated with COVID-19

(2020) Elizabeth R. Mann et al.   Science Immunology

Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-19

(2020) Saskia Trump et al.   NATURE BIOTECHNOLOGY

Minimizing Batch Effects in Mass Cytometry Data

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CXCR4, the master regulator of neutrophil trafficking in homoeostasis and disease

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KLRG1 + Effector CD8 + T Cells Lose KLRG1, Differentiate into All Memory T Cell Lineages, and Convey Enhanced Protective Immunity

(2018) Dietmar Herndler-Brandstetter et al.   IMMUNITY

Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets

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A Universal Live Cell Barcoding-Platform for Multiplexed Human Single Cell Analysis

(2018) Felix J. Hartmann et al.   Scientific Reports

Selective graft-versus-leukemia depends on magnitude and diversity of the alloreactive T cell response

(2017) Cornelis A.M. van Bergen et al.   JOURNAL OF CLINICAL INVESTIGATION

Optimization and testing of dried antibody tube: The EuroFlow LST and PIDOT tubes as examples

(2017) Vincent H.J. van der Velden et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Novel Analysis of Immune Cells from Nasal Microbiopsy Demonstrates Reliable, Reproducible Data for Immune Populations, and Superior Cytokine Detection Compared to Nasal Wash

(2017) Simon P. Jochems et al.   PLoS One

Heparin reduces nonspecific eosinophil staining artifacts in mass cytometry experiments

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Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

(2015) Eli R Zunder et al.   Nature Protocols

Potential Contribution of IL-7 to Allergen-Induced Eosinophilic Airway Inflammation in Asthma

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Smart-seq2 for sensitive full-length transcriptome profiling in single cells

(2013) Simone Picelli et al.   NATURE METHODS

CD11c identifies a subset of murine liver natural killer cells that responds to adenoviral hepatitis

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