标题
Locus-specific expression of transposable elements in single cells with CELLO-seq
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-11-16
DOI
10.1038/s41587-021-01093-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
- (2021) Søren M. Karst et al. NATURE METHODS
- Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
- (2020) Bernardo Rodriguez-Martin et al. NATURE GENETICS
- A dual-constriction biological nanopore resolves homonucleotide sequences with high fidelity
- (2020) Sander E. Van der Verren et al. NATURE BIOTECHNOLOGY
- Measuring and interpreting transposable element expression
- (2020) Sophie Lanciano et al. NATURE REVIEWS GENETICS
- TEX15 is an essential executor of MIWI2-directed transposon DNA methylation and silencing
- (2020) Theresa Schöpp et al. Nature Communications
- High throughput error corrected Nanopore single cell transcriptome sequencing
- (2020) Kevin Lebrigand et al. Nature Communications
- Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling
- (2020) Adam D. Ewing et al. MOLECULAR CELL
- A single-cell molecular map of mouse gastrulation and early organogenesis
- (2019) Blanca Pijuan-Sala et al. NATURE
- Orchestrating single-cell analysis with Bioconductor
- (2019) Robert A. Amezquita et al. NATURE METHODS
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity
- (2018) Michelle Percharde et al. CELL
- Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development
- (2018) Chenfei Wang et al. NATURE CELL BIOLOGY
- Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA
- (2018) Roger Volden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development
- (2018) Thorsten Boroviak et al. DEVELOPMENT
- The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology
- (2017) Eugene J. Gardner et al. GENOME RESEARCH
- UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
- (2017) Tom Smith et al. GENOME RESEARCH
- The Human Cell Atlas: from vision to reality
- (2017) Orit Rozenblatt-Rosen et al. NATURE
- Common genetic variation drives molecular heterogeneity in human iPSCs
- (2017) Helena Kilpinen et al. NATURE
- LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo
- (2017) Joanna W Jachowicz et al. NATURE GENETICS
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Large-Scale Low-Cost NGS Library Preparation Using a Robust Tn5 Purification and Tagmentation Protocol
- (2017) Bianca P. Hennig et al. G3-Genes Genomes Genetics
- Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition
- (2017) Yun Huang et al. eLife
- Activation of Lineage Regulators and Transposable Elements across a Pluripotent Spectrum
- (2017) Jamie A. Hackett et al. Stem Cell Reports
- The impact of transposable elements on mammalian development
- (2016) Jose L. Garcia-Perez et al. DEVELOPMENT
- Resetting Epigenetic Memory by Reprogramming of Histone Modifications in Mammals
- (2016) Hui Zheng et al. MOLECULAR CELL
- Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos
- (2016) Xiaoyu Liu et al. NATURE
- Allelic reprogramming of the histone modification H3K4me3 in early mammalian development
- (2016) Bingjie Zhang et al. NATURE
- The landscape of accessible chromatin in mammalian preimplantation embryos
- (2016) Jingyi Wu et al. NATURE
- A comprehensive approach to expression of L1 loci
- (2016) Prescott Deininger et al. NUCLEIC ACIDS RESEARCH
- The human-induced pluripotent stem cell initiative—data resources for cellular genetics
- (2016) Ian Streeter et al. NUCLEIC ACIDS RESEARCH
- Genome-wide quantification of rare somatic mutations in normal human tissues using massively parallel sequencing
- (2016) Margaret L. Hoang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells
- (2016) Sabine Klawitter et al. Nature Communications
- Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci
- (2016) Claude Philippe et al. eLife
- Defining cell types and states with single-cell genomics
- (2015) Cole Trapnell GENOME RESEARCH
- Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer
- (2015) Esa Pitkänen et al. Oncotarget
- Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing
- (2014) E. Helman et al. GENOME RESEARCH
- Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
- (2014) Simone Picelli et al. GENOME RESEARCH
- Full-length RNA-seq from single cells using Smart-seq2
- (2014) Simone Picelli et al. Nature Protocols
- DBTMEE: a database of transcriptome in mouse early embryos
- (2014) Sung-Joon Park et al. NUCLEIC ACIDS RESEARCH
- Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes
- (2014) J. M. C. Tubio et al. SCIENCE
- Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
- (2014) Hiroaki Okae et al. PLoS Genetics
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Differential L1 regulation in pluripotent stem cells of humans and apes
- (2013) Maria C. N. Marchetto et al. NATURE
- Smart-seq2 for sensitive full-length transcriptome profiling in single cells
- (2013) Simone Picelli et al. NATURE METHODS
- Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA
- (2013) Anas Fadloun et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Embryonic stem cell potency fluctuates with endogenous retrovirus activity
- (2012) Todd S. Macfarlan et al. NATURE
- Reprogramming somatic cells into iPS cells activates LINE-1 retroelement mobility
- (2011) Silke Wissing et al. HUMAN MOLECULAR GENETICS
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Chromatin Structure and Gene Expression Programs of Human Embryonic and Induced Pluripotent Stem Cells
- (2010) Matthew G. Guenther et al. Cell Stem Cell
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Epigenetic Control of Retrotransposon Expression in Human Embryonic Stem Cells
- (2010) A. Macia et al. MOLECULAR AND CELLULAR BIOLOGY
- Human DNA methylomes at base resolution show widespread epigenomic differences
- (2009) Ryan Lister et al. NATURE
- The regulated retrotransposon transcriptome of mammalian cells
- (2009) Geoffrey J Faulkner et al. NATURE GENETICS
- A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE
- (2008) Geoffrey J. Faulkner et al. GENOMICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now