Interplay between microbial community composition and chemodiversity of dissolved organic matter throughout the Black Sea water column redox gradient

Microbial sulfate reduction and organic sulfur formation in sinking marine particles

(2021) M. R. Raven et al.   SCIENCE

Sulfurization of dissolved organic matter in the anoxic water column of the Black Sea

(2021) Gonzalo V. Gomez-Saez et al.   Science Advances

A bacterial isolate from the Black Sea oxidizes sulfide with manganese(IV) oxide

(2019) Jan V. Henkel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean

(2019) Barbara Bayer et al.   ENVIRONMENTAL MICROBIOLOGY

Phytoplankton biomass, primary production and chemoautotrophic production of the Western Black Sea in April 2003

(2019) Dilek Ediger et al.   JOURNAL OF MARINE SYSTEMS

A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone

(2019) Saara Suominen et al.   ENVIRONMENTAL MICROBIOLOGY

Dark N2 fixation: nifH expression in the redoxcline of the Black Sea

(2018) JB Kirkpatrick et al.   AQUATIC MICROBIAL ECOLOGY

Phosphorus dynamics in and below the redoxcline in the Black Sea and implications for phosphorus burial

(2018) N. Dijkstra et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Extensive processing of sediment pore water dissolved organic matter during anoxic incubation as observed by high-field mass spectrometry (FTICR-MS)

(2018) Juliana Valle et al.   WATER RESEARCH

Universal molecular structures in natural dissolved organic matter

(2018) Maren Zark et al.   Nature Communications

Anaerobic Ammonium Oxidation in Acidic Red Soils

(2018) Jiapeng Wu et al.   Frontiers in Microbiology

A combined lipidomic and 16S rRNA gene amplicon sequencing approach reveals archaeal sources of intact polar lipids in the stratified Black Sea water column

(2018) Martina Sollai et al.   Geobiology

The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales

(2018) Hong-Yi Li et al.   Microbiome

Unraveling signatures of biogeochemical processes and the depositional setting in the molecular composition of pore water DOM across different marine environments

(2017) Frauke Schmidt et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Molecular properties of deep-sea dissolved organic matter are predictable by the central limit theorem: Evidence from tandem FT-ICR-MS

(2017) Maren Zark et al.   MARINE CHEMISTRY

Thermodynamically controlled preservation of organic carbon in floodplains

(2017) Kristin Boye et al.   Nature Geoscience

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation

(2017) Maria G. Pachiadaki et al.   SCIENCE

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

Predicted microbial secretomes and their target substrates in marine sediment

(2017) William D. Orsi et al.   Nature Microbiology

Hypoxia causes preservation of labile organic matter and changes seafloor microbial community composition (Black Sea)

(2017) Gerdhard L. Jessen et al.   Science Advances

Comparative Single-Cell Genomics of Chloroflexi from the Okinawa Trough Deep-Subsurface Biosphere

(2016) Heather Fullerton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular alteration of marine dissolved organic matter under experimental hydrothermal conditions

(2016) Jeffrey A. Hawkes et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Net removal of dissolved organic carbon in the anoxic waters of the Black Sea

(2016) Andrew R. Margolin et al.   MARINE CHEMISTRY

SAR11 bacteria linked to ocean anoxia and nitrogen loss

(2016) Despina Tsementzi et al.   NATURE

Dissolved organic matter in pore water of Arctic Ocean sediments: Environmental influence on molecular composition

(2016) Pamela E. Rossel et al.   ORGANIC GEOCHEMISTRY

Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level

(2016) Judith Lucas et al.   Frontiers in Microbiology

Conservation of dissolved organic matter molecular composition during mixing of the deep water masses of the northeast Atlantic Ocean

(2015) Roberta L. Hansman et al.   MARINE CHEMISTRY

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

From mass to structure: an aromaticity index for high-resolution mass data of natural organic matter

(2015) B. P. Koch et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

UnculturedDesulfobacteraceaeand Crenarchaeotal group C3 incorporate13C-acetate in coastal marine sediment

(2015) Hyunsoo Na et al.   Environmental Microbiology Reports

Marine sequestration of carbon in bacterial metabolites

(2015) Oliver J. Lechtenfeld et al.   Nature Communications

Microbial Communities and Organic Matter Composition in Surface and Subsurface Sediments of the Helgoland Mud Area, North Sea

(2015) Oluwatobi E. Oni et al.   Frontiers in Microbiology

A Method Detection Limit for the Analysis of Natural Organic Matter via Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

(2014) Thomas Riedel et al.   ANALYTICAL CHEMISTRY

An intercomparison of three methods for the large-scale isolation of oceanic dissolved organic matter

(2014) Nelson W. Green et al.   MARINE CHEMISTRY

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Structuring of bacterioplankton communities by specific dissolved organic carbon compounds

(2012) Laura Gómez-Consarnau et al.   ENVIRONMENTAL MICROBIOLOGY

Tracking differential incorporation of dissolved organic carbon types among diverse lineages of Sargasso Sea bacterioplankton

(2012) Craig E. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

Free-living and aggregate-associated Planctomycetes in the Black Sea

(2012) Clara A. Fuchsman et al.   FEMS MICROBIOLOGY ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Microbial ecology of expanding oxygen minimum zones

(2012) Jody J. Wright et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Ecophysiological role and function of uncultured Chloroflexi in an anammox reactor

(2012) Tomonori Kindaichi et al.   WATER SCIENCE AND TECHNOLOGY

Stimulation of Autotrophic Denitrification by Intrusions of the Bosporus Plume into the Anoxic Black Sea

(2012) Clara A. Fuchsman et al.   Frontiers in Microbiology

Concurrent activity of anammox and denitrifying bacteria in the Black Sea

(2012) John B. Kirkpatrick et al.   Frontiers in Microbiology

Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone

(2011) Clara A. Fuchsman et al.   FEMS MICROBIOLOGY ECOLOGY

Degradation of natural organic matter: A thermodynamic analysis

(2011) Douglas E. LaRowe et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater

(2011) Thorsten Dittmar et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights

(2011) Dennis Hansell et al.   OCEANOGRAPHY

The Impact of Microbial Metabolism on Marine Dissolved Organic Matter

(2010) Elizabeth B. Kujawinski   Annual Review of Marine Science

Large-scale distribution and activity patterns of an extremely low-light-adapted population of green sulfur bacteria in the Black Sea

(2010) Evelyn Marschall et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of active chemolithoautotrophic prokaryotes in the sulfidic zone of a Black Sea pelagic redoxcline as determined by rRNA-based stable isotope probing

(2010) Sabine Glaubitz et al.   FEMS MICROBIOLOGY ECOLOGY

Rates and regulation of anaerobic ammonium oxidation and denitrification in the Black Sea

(2010) Marlene M. Jensen et al.   LIMNOLOGY AND OCEANOGRAPHY

Molecular characterization of dissolved organic matter in pore water of continental shelf sediments

(2009) Frauke Schmidt et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Rapid, oxygen-dependent microbial Mn(II) oxidation kinetics at sub-micromolar oxygen concentrations in the Black Sea suboxic zone

(2009) Brian G. Clement et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Cultivation of Uncultured Chloroflexi Subphyla: Significance and Ecophysiology of Formerly Uncultured Chloroflexi 'Subphylum I' with Natural and Biotechnological Relevance

(2009) Takeshi Yamada et al.   MICROBES AND ENVIRONMENTS

Microbial degradation rates of small peptides and amino acids in the oxygen minimum zone of Chilean coastal waters

(2008) Silvio Pantoja et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

MODELING THE RELEASE OF DISSOLVED ORGANIC MATTER BY PHYTOPLANKTON1

(2008) Kevin J. Flynn et al.   JOURNAL OF PHYCOLOGY