Evidence for a mouse origin of the SARS-CoV-2 Omicron variant

Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift

(2022) Elisabetta Cameroni et al.   NATURE

No higher infectivity but immune escape of SARS-CoV-2 501Y.V2 variants

(2021) Qianqian Li et al.   CELL

The missing expression level-evolutionary rate anticorrelation in viruses does not support protein function as a main constraint on sequence evolution

(2021) Changshuo Wei et al.   Genome Biology and Evolution

SARS-CoV-2 rapidly adapts in aged BALB/c mice and induces typical pneumonia

(2021) Yufei Zhang et al.   JOURNAL OF VIROLOGY

SARS-CoV-2 evolution during treatment of chronic infection

(2021) Steven A. Kemp et al.   NATURE

Mutation rates and selection on synonymous mutations in SARS-CoV-2

(2021) Nicola De Maio et al.   Genome Biology and Evolution

Comparative analysis reveals the species-specific genetic determinants of ACE2 required for SARS-CoV-2 entry

(2021) Wenlin Ren et al.   PLoS Pathogens

Q493K and Q498H substitutions in Spike promote adaptation of SARS-CoV-2 in mice

(2021) Kun Huang et al.   EBioMedicine

Increased viral variants in children and young adults with impaired humoral immunity and persistent SARS-CoV-2 infection: A consecutive case series

(2021) Thao T. Truong et al.   EBioMedicine

SARS-CoV-2 Vaccines Based on the Spike Glycoprotein and Implications of New Viral Variants

(2021) Daniel Martínez-Flores et al.   Frontiers in Immunology

Heavily mutated Omicron variant puts scientists on alert

(2021) Ewen Callaway   NATURE

Where did ‘weird’ Omicron come from?

(2021) Kai Kupferschmidt   SCIENCE

Characterization and structural basis of a lethal mouse-adapted SARS-CoV-2

(2021) Shihui Sun et al.   Nature Communications

Mutation signatures inform the natural host of SARS-CoV-2

(2021) Shanjun Deng et al.   National Science Review

A new coronavirus associated with human respiratory disease in China

(2020) Fan Wu et al.   NATURE

A pneumonia outbreak associated with a new coronavirus of probable bat origin

(2020) Peng Zhou et al.   NATURE

The Architecture of SARS-CoV-2 Transcriptome

(2020) Dongwan Kim et al.   CELL

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

(2020) Jun Lan et al.   NATURE

Structural and functional properties of SARS-CoV-2 spike protein: potential antivirus drug development for COVID-19

(2020) Yuan Huang et al.   ACTA PHARMACOLOGICA SINICA

Adaptation of SARS-CoV-2 in BALB/c mice for testing vaccine efficacy

(2020) Hongjing Gu et al.   SCIENCE

Excessive G–U transversions in novel allele variants in SARS-CoV-2 genomes

(2020) Alexander Y. Panchin et al.   PeerJ

A Mouse-Adapted SARS-CoV-2 Induces Acute Lung Injury and Mortality in Standard Laboratory Mice

(2020) Sarah R. Leist et al.   CELL

A single dose of an adenovirus-vectored vaccine provides protection against SARS-CoV-2 challenge

(2020) Shipo Wu et al.   Nature Communications

SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals

(2020) S. D. Lam et al.   Scientific Reports

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

(2020) João P. G. L. M. Rodrigues et al.   PLoS Computational Biology

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

GISAID: Global initiative on sharing all influenza data – from vision to reality

(2017) Yuelong Shu et al.   Eurosurveillance

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

(2016) G.C.P. van Zundert et al.   JOURNAL OF MOLECULAR BIOLOGY

Virus Variation Resource – improved response to emergent viral outbreaks

(2016) Eneida L. Hatcher et al.   NUCLEIC ACIDS RESEARCH

APOBECs and virus restriction

(2015) Reuben S. Harris et al.   VIROLOGY

FastML: a web server for probabilistic reconstruction of ancestral sequences

(2012) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Oxidative damage to RNA: mechanisms, consequences, and diseases

(2010) Qiongman Kong et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Are Scoring Functions in Protein−Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark

(2010) Panagiotis L. Kastritis et al.   JOURNAL OF PROTEOME RESEARCH

APOBEC-1-mediated RNA editing

(2010) Valerie Blanc et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine