Comparative genomics of tadpole shrimps (Crustacea, Branchiopoda, Notostraca): Dynamic genome evolution against the backdrop of morphological stasis
出版年份 2021 全文链接
标题
Comparative genomics of tadpole shrimps (Crustacea, Branchiopoda, Notostraca): Dynamic genome evolution against the backdrop of morphological stasis
作者
关键词
Arthropoda, Genome sequencing, Living fossils, Parthenogenesis, Tadpole shrimps, Substitution rate
出版物
GENOMICS
Volume 113, Issue 6, Pages 4163-4172
出版商
Elsevier BV
发表日期
2021-11-06
DOI
10.1016/j.ygeno.2021.11.001
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
- (2021) Mosè Manni et al. MOLECULAR BIOLOGY AND EVOLUTION
- BASE: A novel workflow to integrate nonubiquitous genes in comparative genomics analyses for selection
- (2021) Giobbe Forni et al. Ecology and Evolution
- IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
- (2020) Bui Quang Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- New methods to calculate concordance factors for phylogenomic datasets
- (2020) Bui Quang Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The tuatara genome reveals ancient features of amniote evolution
- (2020) Neil J. Gemmell et al. NATURE
- Genomic Features of Parthenogenetic Animals
- (2020) Kamil S Jaron et al. JOURNAL OF HEREDITY
- CAFE 5 models variation in evolutionary rates among gene families
- (2020) Fábio K Mendes et al. BIOINFORMATICS
- Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution
- (2019) Changcheng Wu et al. Genes
- Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)
- (2019) Andrea Luchetti et al. Zoological Letters
- A new calmanostracan crustacean species from the Cretaceous Yixian Formation and a simple approach for differentiating fossil tadpole shrimps and their relatives
- (2019) Philipp Wagner et al. Zoological Letters
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- OUP accepted manuscript
- (2018) BIOSCIENCE
- Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda: highlighting the strength of taxon-specific matrices in phylogenomics
- (2018) Martin Schwentner et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Draft genomes and genomic divergence of two Lepidurus tadpole shrimp species (Crustacea, Branchiopoda, Notostraca)
- (2018) Castrense Savojardo et al. Molecular Ecology Resources
- A New Standard for Crustacean Genomes: The Highly Contiguous, Annotated Genome Assembly of the Clam Shrimp Eulimnadia texana Reveals HOX Gene Order and Identifies the Sex Chromosome
- (2017) James G Baldwin-Brown et al. Genome Biology and Evolution
- ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
- (2017) Shaun D. Jackman et al. GENOME RESEARCH
- Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants
- (2017) Amanda R. De La Torre et al. MOLECULAR BIOLOGY AND EVOLUTION
- Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
- (2017) Romain Blanc-Mathieu et al. PLoS Genetics
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- Gene Family Evolution Reflects Adaptation to Soil Environmental Stressors in the Genome of the CollembolanOrchesella cincta
- (2016) Anna Faddeeva-Vakhrusheva et al. Genome Biology and Evolution
- Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements
- (2016) Amir Szitenberg et al. Genome Biology and Evolution
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Redundans: an assembly pipeline for highly heterozygous genomes
- (2016) Leszek P. Pryszcz et al. NUCLEIC ACIDS RESEARCH
- Gene Tree Discordance Causes Apparent Substitution Rate Variation
- (2016) Fábio K. Mendes et al. SYSTEMATIC BIOLOGY
- Dating the origin of the major lineages of Branchiopoda
- (2016) Xiao-Yan Sun et al. Palaeoworld
- Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
- (2015) Domitille Chalopin et al. Genome Biology and Evolution
- No Accumulation of Transposable Elements in Asexual Arthropods
- (2015) Jens Bast et al. MOLECULAR BIOLOGY AND EVOLUTION
- The oldest notostracan (Upper Devonian Strud locality, Belgium)
- (2015) Linda Lagebro et al. PALAEONTOLOGY
- Fast Dating Using Least-Squares Criteria and Algorithms
- (2015) Thu-Hien To et al. SYSTEMATIC BIOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
- (2014) Rei Kajitani et al. GENOME RESEARCH
- Evolutionary dynamics of R2 retroelement and insertion inheritance in the genome of bisexual and parthenogeneticBacillus rossiuspopulations (Insecta Phasmida)
- (2014) L. Bonandin et al. INSECT MOLECULAR BIOLOGY
- Identification, expression, and molecular evolution of microRNAs in the “living fossil”Triops cancriformis(tadpole shrimp)
- (2014) Kahori T. Ikeda et al. RNA
- Why coelacanths are not ‘living fossils’
- (2013) Didier Casane et al. BIOESSAYS
- Improving Genome-Wide Scans of Positive Selection by Using Protein Isoforms of Similar Length
- (2013) José Luis Villanueva-Cañas et al. Genome Biology and Evolution
- Onychocaudata (Branchiopoda: Diplostraca), a new high-level taxon in branchiopod systematics
- (2013) Jørgen Olesen et al. JOURNAL OF CRUSTACEAN BIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Molecular phylogeny of the Notostraca
- (2013) Michael Korn et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The African coelacanth genome provides insights into tetrapod evolution
- (2013) Chris T. Amemiya et al. NATURE
- Multiple global radiations in tadpole shrimps challenge the concept of ‘living fossils’
- (2013) Thomas C. Mathers et al. PeerJ
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Transposon proliferation in an asexual parasitoid
- (2012) KEN KRAAIJEVELD et al. MOLECULAR ECOLOGY
- Toward a Global Phylogeny of the “Living Fossil" Crustacean Order of the Notostraca
- (2012) Bram Vanschoenwinkel et al. PLoS One
- The Ecoresponsive Genome of Daphnia pulex
- (2011) J. K. Colbourne et al. SCIENCE
- DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex
- (2010) Sarah Schaack et al. GENOME BIOLOGY
- Correlates of substitution rate variation in mammalian protein-coding sequences
- (2009) John J Welch et al. BMC EVOLUTIONARY BIOLOGY
- Molecular taxonomy and phylogeny of ItalianLepidurustaxa (Branchiopoda: Notostraca)
- (2009) B. Mantovani et al. ITALIAN JOURNAL OF ZOOLOGY
- Genetic variability and reproductive modalities in European populations ofTriops cancriformis(Crustacea, Branchiopoda, Notostraca)
- (2009) A. Velonà et al. ITALIAN JOURNAL OF ZOOLOGY
- Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes
- (2008) ELIE S. DOLGIN et al. Genetics Research
- Mitochondrial and nuclear DNA variability in the living fossil Triops cancriformis (Bosc, 1801) (Crustacea, Branchiopoda, Notostraca)
- (2008) B Mantovani et al. HEREDITY
- The Association Between Breeding System and Transposable Element Dynamics in Daphnia Pulex
- (2008) Pegah Valizadeh et al. JOURNAL OF MOLECULAR EVOLUTION
- The genome of the model beetle and pest Tribolium castaneum
- (2008) Stephen Richards et al. NATURE
- Rapid molecular evolution in a living fossil
- (2008) Jennifer M. Hay et al. TRENDS IN GENETICS
- The Population Genetics of dN/dS
- (2008) Sergey Kryazhimskiy et al. PLoS Genetics
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