Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis
出版年份 2021 全文链接
标题
Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis
作者
关键词
-
出版物
GENOME RESEARCH
Volume 31, Issue 12, Pages 2290-2302
出版商
Cold Spring Harbor Laboratory
发表日期
2021-11-13
DOI
10.1101/gr.275752.121
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Evolutionary dynamics of transposable elements in bdelloid rotifers
- (2021) Reuben W Nowell et al. eLife
- The methylome of the model arbuscular mycorrhizal fungus, Rhizophagus irregularis, shares characteristics with early diverging fungi and Dikarya
- (2021) Anurag Chaturvedi et al. Communications Biology
- Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
- (2021) Gökalp Yildirir et al. NEW PHYTOLOGIST
- RepeatModeler2 for automated genomic discovery of transposable element families
- (2020) Jullien M. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Parasexual and Sexual Reproduction in Arbuscular Mycorrhizal Fungi: Room for Both
- (2020) Gökalp Yildirir et al. TRENDS IN MICROBIOLOGY
- Different Genetic Sources Contribute to the Small RNA Population in the Arbuscular Mycorrhizal Fungus Gigaspora margarita
- (2020) Alessandro Silvestri et al. Frontiers in Microbiology
- A universal method for the rapid isolation of all known classes of functional silencing small RNAs
- (2020) Thomas Grentzinger et al. NUCLEIC ACIDS RESEARCH
- Nuclear Dynamics in the Arbuscular Mycorrhizal Fungi
- (2020) Vasilis Kokkoris et al. TRENDS IN PLANT SCIENCE
- Lineage-Specific Genes and Cryptic Sex: Parallels and Differences between Arbuscular Mycorrhizal Fungi and Fungal Pathogens
- (2020) Didier Reinhardt et al. TRENDS IN PLANT SCIENCE
- Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
- (2019) Emmanuelle Morin et al. NEW PHYTOLOGIST
- Decoding the 5′ nucleotide bias of PIWI-interacting RNAs
- (2019) Chad B. Stein et al. Nature Communications
- In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant
- (2019) Alessandro Silvestri et al. BMC GENOMICS
- Diversity of cytosine methylation across the fungal tree of life
- (2019) Adam J. Bewick et al. Nature Ecology & Evolution
- DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning
- (2019) Peng Ni et al. BIOINFORMATICS
- g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
- (2019) Uku Raudvere et al. NUCLEIC ACIDS RESEARCH
- At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions
- (2019) Francesco Venice et al. ENVIRONMENTAL MICROBIOLOGY
- The birth and death of effectors in rapidly evolving filamentous pathogen genomes
- (2018) Simone Fouché et al. CURRENT OPINION IN MICROBIOLOGY
- High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
- (2018) Eric C. H. Chen et al. NEW PHYTOLOGIST
- Horizontal Gene Transfer From Bacteria and Plants to the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis
- (2018) Meng Li et al. Frontiers in Plant Science
- RiCRN1, a Crinkler Effector From the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis, Functions in Arbuscule Development
- (2018) Stefanie Voß et al. Frontiers in Microbiology
- Contemporaneous radiations of fungi and plants linked to symbiosis
- (2018) François Lutzoni et al. Nature Communications
- Single nucleus sequencing reveals evidence of inter-nucleus recombination in arbuscular mycorrhizal fungi
- (2018) Eric CH Chen et al. eLife
- LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
- (2017) Shujun Ou et al. PLANT PHYSIOLOGY
- Fungal Mating in the Most Widespread Plant Symbionts?
- (2017) Nicolas Corradi et al. TRENDS IN PLANT SCIENCE
- Multitasking of the piRNA Silencing Machinery: Targeting Transposable Elements and Foreign Genes in the Bdelloid Rotifer Adineta vaga
- (2016) Fernando Rodriguez et al. GENETICS
- Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
- (2016) Luigi Faino et al. GENOME RESEARCH
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
- (2016) Raúl Castanera et al. PLoS Genetics
- Multitasking of the piRNA Silencing Machinery: Targeting Transposable Elements and Foreign Genes in the Bdelloid Rotifer Adineta vaga
- (2016) Fernando Rodriguez et al. GENETICS
- Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi
- (2016) Jeanne Ropars et al. Nature Microbiology
- TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets
- (2015) Ying Jin et al. BIOINFORMATICS
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- A role for palindromic structures in the cis -region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response
- (2015) Alexandros Bousios et al. GENOME RESEARCH
- Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: Transkingdom gene transfer in an ancient mycoplasma-fungus association
- (2015) Gloria Torres-Cortés et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in
- (2015) Lei Gong et al. Plant Genome
- Evolutionally dynamic L1 regulation in embryonic stem cells
- (2014) N. Castro-Diaz et al. GENES & DEVELOPMENT
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
- (2014) Jürgen Cox et al. MOLECULAR & CELLULAR PROTEOMICS
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Gene body methylation shows distinct patterns associated with different gene origins and duplication modes and has a heterogeneous relationship with gene expression inOryza sativa(rice)
- (2013) Yupeng Wang et al. NEW PHYTOLOGIST
- Selective Acquisition and Retention of Genomic Sequences by Pack-Mutator-Like Elements Based on Guanine-Cytosine Content and the Breadth of Expression
- (2013) A. A. Ferguson et al. PLANT PHYSIOLOGY
- Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
- (2013) E. Tisserant et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ShortStack: Comprehensive annotation and quantification of small RNA genes
- (2013) M. J. Axtell RNA
- RNA Interference Pathways in Fungi: Mechanisms and Functions
- (2012) Shwu-Shin Chang et al. Annual Review of Microbiology
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Regulation of small RNA stability: methylation and beyond
- (2012) Lijuan Ji et al. CELL RESEARCH
- Recent Retrotransposon Insertions Are Methylated and Phylogenetically Clustered in Japonica Rice (Oryza sativa spp. japonica)
- (2012) Bridgett M. vonHoldt et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens
- (2012) Daniel Croll et al. PLoS Pathogens
- Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage
- (2011) Sébastien Halary et al. Genome Biology and Evolution
- Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
- (2011) J. D. Hollister et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of an Active New Mutator Transposable Element in Maize
- (2011) Bao-Cai Tan et al. G3-Genes Genomes Genetics
- Stc1: A Critical Link between RNAi and Chromatin Modification Required for Heterochromatin Integrity
- (2010) Elizabeth H. Bayne et al. CELL
- Clonality and Recombination in the Life History of an Asexual Arbuscular Mycorrhizal Fungus
- (2010) H. C. den Bakker et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism
- (2010) P. D. Spanu et al. SCIENCE
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Coevolution between a Family of Parasite Virulence Effectors and a Class of LINE-1 Retrotransposons
- (2009) Soledad Sacristán et al. PLoS One
- DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera
- (2009) N. Elango et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide
- (2008) Shijun Mi et al. CELL
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- Argonaute proteins: key players in RNA silencing
- (2007) Gyorgy Hutvagner et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More