Leapfrog dynamics in phage‐bacteria coevolution revealed by joint analysis of cross‐infection phenotypes and whole genome sequencing

Sustained coevolution of phage Lambda and Escherichia coli involves inner- as well as outer-membrane defences and counter-defences

(2021) Alita R. Burmeister et al.   MICROBIOLOGY-SGM

Coevolutionary phage training leads to greater bacterial suppression and delays the evolution of phage resistance

(2021) Joshua M. Borin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The arms race between bacteria and their phage foes

(2020) Hannah G. Hampton et al.   NATURE

Host–parasite co-evolution and its genomic signature

(2020) Dieter Ebert et al.   NATURE REVIEWS GENETICS

Destabilizing mutations encode nongenetic variation that drives evolutionary innovation

(2018) Katherine L. Petrie et al.   SCIENCE

Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature

(2018) Rohan Maddamsetti et al.   EVOLUTION

Leaky resistance and the conditions for the existence of lytic bacteriophage

(2018) Waqas N. Chaudhry et al.   PLOS BIOLOGY

Understanding the role of eco-evolutionary feedbacks in host-parasite coevolution

(2018) Ben Ashby et al.   JOURNAL OF THEORETICAL BIOLOGY

The dynamics of molecular evolution over 60,000 generations

(2017) Benjamin H. Good et al.   NATURE

Host–parasite fluctuating selection in the absence of specificity

(2017) Alex Best et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Host coevolution alters the adaptive landscape of a virus

(2016) Alita R. Burmeister et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ecological speciation of bacteriophage lambda in allopatry and sympatry

(2016) J. R. Meyer et al.   SCIENCE

Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli

(2015) Rohan Maddamsetti et al.   GENETICS

Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics

(2015) Jennifer R Brum et al.   ISME Journal

Quantitative evolutionary dynamics using high-resolution lineage tracking

(2015) Sasha F. Levy et al.   NATURE

BiMat: aMATLABpackage to facilitate the analysis of bipartite networks

(2015) Cesar O. Flores et al.   Methods in Ecology and Evolution

Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli

(2015) Rohan Maddamsetti et al.   GENETICS

Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes

(2015) Michael Baym et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Contrasted coevolutionary dynamics between a bacterial pathogen and its bacteriophages

(2014) A. Betts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

(2013) Gregory I. Lang et al.   NATURE

Viral Phylodynamics

(2013) Erik M. Volz et al.   PLoS Computational Biology

MULTISCALE MODEL OF CRISPR-INDUCED COEVOLUTIONARY DYNAMICS: DIVERSIFICATION AT THE INTERFACE OF LAMARCK AND DARWIN

(2012) Lauren M. Childs et al.   EVOLUTION

Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages

(2012) Cesar O Flores et al.   ISME Journal

Disentangling nestedness from models of ecological complexity

(2012) Alex James et al.   NATURE

Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda

(2012) J. R. Meyer et al.   SCIENCE

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Persisting Viral Sequences Shape Microbial CRISPR-based Immunity

(2012) Ariel D. Weinberger et al.   PLoS Computational Biology

Host-parasite coevolutionary arms races give way to fluctuating selection

(2011) Alex R. Hall et al.   ECOLOGY LETTERS

Statistical structure of host-phage interactions

(2011) C. O. Flores et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteria-Phage Antagonistic Coevolution in Soil

(2011) P. Gomez et al.   SCIENCE

The phage-host arms race: Shaping the evolution of microbes

(2010) Adi Stern et al.   BIOESSAYS

Viral abundance, production, decay rates and life strategies (lysogeny versus lysis) in Lake Bourget (France)

(2010) Rozenn Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic basis of infectivity evolution in a bacteriophage

(2010) PAULINE D. SCANLAN et al.   MOLECULAR ECOLOGY

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

A Forward-Genetic Screen and Dynamic Analysis of Lambda Phage Host-Dependencies Reveals an Extensive Interaction Network and a New Anti-Viral Strategy

(2010) Nathaniel D. Maynard et al.   PLoS Genetics

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

Time-shift experiments as a tool to study antagonistic coevolution

(2009) Sabrina Gaba et al.   TRENDS IN ECOLOGY & EVOLUTION

Host-parasite coevolution and patterns of adaptation across time and space

(2008) S. GANDON et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement

(2008) Mário Almeida-Neto et al.   OIKOS