Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade
出版年份 2021 全文链接
标题
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade
作者
关键词
-
出版物
DNA RESEARCH
Volume 28, Issue 6, Pages -
出版商
Oxford University Press (OUP)
发表日期
2021-10-19
DOI
10.1093/dnares/dsab024
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Are Cyanobacteria an Ancestor of Chloroplasts or Just One of the Gene Donors for Plants and Algae?
- (2021) Naoki Sato Genes
- IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
- (2020) Bui Quang Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Quo vadis, taxonomy of cyanobacteria (2019)
- (2020) Jiri Komarek Fottea
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
- (2020) Francesco Asnicar et al. Nature Communications
- Evolutionary Changes in DnaA-Dependent Chromosomal Replication in Cyanobacteria
- (2020) Ryudo Ohbayashi et al. Frontiers in Microbiology
- Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing
- (2020) Yuu Hirose et al. Microorganisms
- Redox stratification within cryoconite granules influences the nitrogen cycle on glaciers
- (2020) Takahiro Segawa et al. FEMS MICROBIOLOGY ECOLOGY
- Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters
- (2020) Yohei Shimura et al. HARMFUL ALGAE
- Diverse Chromatic Acclimation Processes Regulating Phycoerythrocyanin and Rod-Shaped Phycobilisome in Cyanobacteria
- (2019) Yuu Hirose et al. Molecular Plant
- The evolution of photosynthesis and aerobic respiration in the cyanobacteria
- (2019) Rochelle M. Soo et al. FREE RADICAL BIOLOGY AND MEDICINE
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
- (2019) Evan Bolyen et al. NATURE BIOTECHNOLOGY
- What's in a name? The case of cyanobacteria
- (2019) Ferran Garcia‐Pichel et al. JOURNAL OF PHYCOLOGY
- The polyphasic analysis of two native Raphidiopsis isolates supports the unification of the genera Raphidiopsis and Cylindrospermopsis (Nostocales, Cyanobacteria)
- (2018) Anabella Aguilera et al. PHYCOLOGIA
- Cyanobacteria: Promising biocatalysts for sustainable chemical production
- (2017) Cory J. Knoot et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- GenBank
- (2017) Dennis A Benson et al. NUCLEIC ACIDS RESEARCH
- Ecogenomics and Taxonomy of Cyanobacteria Phylum
- (2017) Juline M. Walter et al. Frontiers in Microbiology
- Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering
- (2016) Yuu Hirose et al. JOURNAL OF BIOTECHNOLOGY
- Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools
- (2016) Yuu Hirose et al. JOURNAL OF BIOTECHNOLOGY
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Endosymbiosis and Eukaryotic Cell Evolution
- (2015) John M. Archibald CURRENT BIOLOGY
- Comparison of the terrestrial cyanobacteriumLeptolyngbyasp. NIES-2104 and the freshwaterLeptolyngbya boryanaPCC 6306 genomes
- (2015) Yohei Shimura et al. DNA RESEARCH
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Assembly: a resource for assembled genomes at NCBI
- (2015) Paul A. Kitts et al. NUCLEIC ACIDS RESEARCH
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- AliView: a fast and lightweight alignment viewer and editor for large datasets
- (2014) Anders Larsson BIOINFORMATICS
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- The rise of oxygen in Earth’s early ocean and atmosphere
- (2014) Timothy W. Lyons et al. NATURE
- CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes
- (2013) Takatomo Fujisawa et al. NUCLEIC ACIDS RESEARCH
- Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
- (2013) P. M. Shih et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
- (2013) P. Flombaum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
- (2013) Sara C Di Rienzi et al. eLife
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
- (2012) Elmar Pruesse et al. BIOINFORMATICS
- Complete Genome Sequence of Acidovorax sp. Strain KKS102, a Polychlorinated-Biphenyl Degrader
- (2012) Y. Ohtsubo et al. JOURNAL OF BACTERIOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- The origin of multicellularity in cyanobacteria
- (2011) Bettina E Schirrmeister et al. BMC EVOLUTIONARY BIOLOGY
- Cyanobacterial Heterocysts
- (2010) K. Kumar et al. Cold Spring Harbor Perspectives in Biology
- Globally Distributed Uncultivated Oceanic N2-Fixing Cyanobacteria Lack Oxygenic Photosystem II
- (2008) J. P. Zehr et al. SCIENCE
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