Transcriptome analysis reveals that high temperatures alter modes of lipid metabolism in juvenile turbot (Scophthalmus maximus) liver

A Medicinal Chemistry-Driven Approach Identified the Sterol Isomerase EBP as the Molecular Target of TASIN Colorectal Cancer Toxins

(2020) Panayotis C. Theodoropoulos et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Hypoxia causes sex-specific hepatic toxicity at the transcriptome level in marine medaka (Oryzias melastigma)

(2020) Keng Po Lai et al.   AQUATIC TOXICOLOGY

Metabolic responses in Scophthalmus maximus kidney subjected to thermal stress

(2020) Shuangshuang Yang et al.   FISH & SHELLFISH IMMUNOLOGY

Life histories determine divergent population trends for fishes under climate warming

(2020) Hui-Yu Wang et al.   Nature Communications

Physiological response of juvenile turbot (Scophthalmus maximus. L) during hyperthermal stress

(2020) Yudong Jia et al.   AQUACULTURE

Metabolic response of Nile tilapia ( Oreochromis niloticus ) to acute and chronic hypoxia stress

(2018) Mengxiao Li et al.   AQUACULTURE

Effects of high temperature on biochemical parameters, oxidative stress, DNA damage and apoptosis of pufferfish ( Takifugu obscurus )

(2018) Chang-Hong Cheng et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Integrated transcriptomic and proteomic analyses reveal potential mechanisms linking thermal stress and depressed disease resistance in the turbot Scophthalmus maximus

(2018) Xin Yue et al.   Scientific Reports

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Cytochrome P450 metabolism of the post-lanosterol intermediates explains enigmas of cholesterol synthesis

(2016) Jure Ačimovič et al.   Scientific Reports

BAIBA attenuates insulin resistance and inflammation induced by palmitate or a high fat diet via an AMPK–PPARδ-dependent pathway in mice

(2015) Tae Woo Jung et al.   DIABETOLOGIA

CD147 reprograms fatty acid metabolism in hepatocellular carcinoma cells through Akt/mTOR/SREBP1c and P38/PPARα pathways

(2015) Jibin Li et al.   JOURNAL OF HEPATOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Lipid Metabolism Genes in Contralateral Unaffected Breast and Estrogen Receptor Status of Breast Cancer

(2013) J. Wang et al.   Cancer Prevention Research

Controlling Cholesterol Synthesis beyond 3-Hydroxy-3-methylglutaryl-CoA Reductase (HMGCR)

(2013) Laura J. Sharpe et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mediating lipid biosynthesis: Implications for cardiovascular disease

(2013) Xiaoli et al.   TRENDS IN CARDIOVASCULAR MEDICINE

Ablation of gp78 in Liver Improves Hyperlipidemia and Insulin Resistance by Inhibiting SREBP to Decrease Lipid Biosynthesis

(2012) Tong-Fei Liu et al.   Cell Metabolism

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Effects of thermal acclimation on transcriptional responses to acute heat stress in the eurythermal fish Gillichthys mirabilis (Cooper)

(2011) Cheryl A. Logan et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Cholesterol-Dependent Degradation of Squalene Monooxygenase, a Control Point in Cholesterol Synthesis beyond HMG-CoA Reductase

(2011) Saloni Gill et al.   Cell Metabolism

Climate change effects on stream and river temperatures across the northwest U.S. from 1980–2009 and implications for salmonid fishes

(2011) D. J. Isaak et al.   CLIMATIC CHANGE

Altered composition of fatty acids exacerbates hepatotumorigenesis during activation of the phosphatidylinositol 3-kinase pathway

(2011) Yotaro Kudo et al.   JOURNAL OF HEPATOLOGY

Gene networks driving bovine milk fat synthesis during the lactation cycle

(2008) Massimo Bionaz et al.   BMC GENOMICS

The beginning of the end for microarrays?

(2008) Jay Shendure   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS