Caudovirales bacteriophages are associated with improved executive function and memory in flies, mice, and humans

SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts

(2021) Ruoshi Zhang et al.   BIOINFORMATICS

Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021)

(2021) Peter J. Walker et al.   ARCHIVES OF VIROLOGY

Fecal Viral Community Responses to High-Fat Diet in Mice

(2020) Anjelique Schulfer et al.   mSphere

The aging imageomics study: rationale, design and baseline characteristics of the study population

(2020) Josep Puig et al.   MECHANISMS OF AGEING AND DEVELOPMENT

The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut

(2020) Ann C. Gregory et al.   Cell Host & Microbe

The gut microbiota–brain axis in behaviour and brain disorders

(2020) Livia H. Morais et al.   NATURE REVIEWS MICROBIOLOGY

IL-4R alpha deficiency influences hippocampal-BDNF signaling pathway to impair reference memory

(2020) T. M. Brombacher et al.   Scientific Reports

Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status

(2020) Jordi Mayneris-Perxachs et al.   Microbiome

Conserved regulation of neurodevelopmental processes and behavior by FoxP in Drosophila

(2019) Anna Castells-Nobau et al.   PLoS One

Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins

(2019) J. Leonardo Moreno-Gallego et al.   Cell Host & Microbe

Inactivation of Dairy Bacteriophages by Thermal and Chemical Treatments

(2019) Mariángeles Briggiler Marcó et al.   Viruses-Basel

Accuracy of Patient Health Questionnaire-9 (PHQ-9) for screening to detect major depression: individual participant data meta-analysis

(2019) Brooke Levis et al.   BMJ-British Medical Journal

The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

(2019) Andrey N. Shkoporov et al.   Cell Host & Microbe

The gut microbiome in neurological disorders

(2019) John F Cryan et al.   LANCET NEUROLOGY

Memory and neuromodulation: A perspective of DNA methylation

(2019) Chi Him Poon et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity

(2018) Eric C. Keen et al.   TRENDS IN MICROBIOLOGY

Brain functional and effective connectivity underlying the information processing speed assessed by the Symbol Digit Modalities Test

(2018) P.H.R. Silva et al.   NEUROIMAGE

Concomitant THC and stress adolescent exposure induces impaired fear extinction and related neurobiological changes in adulthood

(2018) Rocio Saravia et al.   NEUROPHARMACOLOGY

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Ménage à trois in the human gut: interactions between host, bacteria and phages

(2017) Mohammadali Khan Mirzaei et al.   NATURE REVIEWS MICROBIOLOGY

The Drosophila melanogaster tribbles pseudokinase is necessary for proper memory formation

(2017) Holly LaFerriere et al.   NEUROBIOLOGY OF LEARNING AND MEMORY

Relevance of Dorsolateral and Frontotemporal Cortex on the Phonemic Verbal Fluency – A fNIRS-Study

(2017) Martin J. Herrmann et al.   NEUROSCIENCE

Tribbles in the 21st Century: The Evolving Roles of Tribbles Pseudokinases in Biology and Disease

(2017) Patrick A. Eyers et al.   TRENDS IN CELL BIOLOGY

The Human Gut Phage Community and Its Implications for Health and Disease

(2017) Pilar Manrique et al.   Viruses-Basel

Streptococcal Diversity of Human Milk and Comparison of Different Methods for the Taxonomic Identification of Streptococci

(2016) Virginia Martín et al.   JOURNAL OF HUMAN LACTATION

Gustatory processing and taste memory inDrosophila

(2016) Pavel Masek et al.   JOURNAL OF NEUROGENETICS

Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat

(2016) John R. Kelly et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Healthy human gut phageome

(2016) Pilar Manrique et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Genome-wide identification of neuronal activity-regulated genes in Drosophila

(2016) Xiao Chen et al.   eLife

Cognition and Synaptic-Plasticity Related Changes in Aged Rats Supplemented with 8- and 10-Carbon Medium Chain Triglycerides

(2016) Dongmei Wang et al.   PLoS One

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression

(2015) Lucia L Peixoto et al.   BMC GENOMICS

Histone Methylation Dynamics and Gene Regulation Occur through the Sensing of One-Carbon Metabolism

(2015) Samantha J. Mentch et al.   Cell Metabolism

A Dopamine-Modulated Neural Circuit Regulating Aversive Taste Memory in Drosophila

(2015) Pavel Masek et al.   CURRENT BIOLOGY

Gustatory Learning and Processing in theDrosophilaMushroom Bodies

(2015) Colleen Kirkhart et al.   JOURNAL OF NEUROSCIENCE

Early life dynamics of the human gut virome and bacterial microbiome in infants

(2015) Efrem S Lim et al.   NATURE MEDICINE

DNA methylation changes in plasticity genes accompany the formation and maintenance of memory

(2015) Rashi Halder et al.   NATURE NEUROSCIENCE

DNA Methylation in Memory Formation

(2015) Frankie D. Heyward et al.   NEUROSCIENTIST

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Relationships between serotonergic and cannabinoid system in depressive-like behavior: a PET study with [11C]-DASB

(2014) Aurelijus Burokas et al.   JOURNAL OF NEUROCHEMISTRY

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

A novel method for the normalization of microRNA RT-PCR data

(2013) Rehman Qureshi et al.   BMC Medical Genomics

The kinase domain of Drosophila Tribbles is required for turnover of fly C/EBP during cellmigration

(2013) Venessa Masoner et al.   DEVELOPMENTAL BIOLOGY

TET1 Controls CNS 5-Methylcytosine Hydroxylation, Active DNA Demethylation, Gene Transcription, and Memory Formation

(2013) Garrett A. Kaas et al.   NEURON

Reproducibility and validity of a food frequency questionnaire among pregnant women in a Mediterranean area

(2013) Jesús Vioque et al.   Nutrition Journal

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Optogenetic induction of aversive taste memory

(2012) Alex C. Keene et al.   NEUROSCIENCE

The ConsensusPathDB interaction database: 2013 update

(2012) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Mutations in genes encoding the glycine cleavage system predispose to neural tube defects in mice and humans

(2011) Ayumi Narisawa et al.   HUMAN MOLECULAR GENETICS

Regulation of Primary Response Genes

(2011) Trent Fowler et al.   MOLECULAR CELL

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Interleukin-6-type cytokines in neuroprotection and neuromodulation: oncostatin M, but not leukemia inhibitory factor, requires neuronal adenosine A1 receptor function

(2010) Shamsudheen Moidunny et al.   JOURNAL OF NEUROCHEMISTRY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests

(2009) Antonio Carvajal-Rodríguez et al.   BMC BIOINFORMATICS

Medium-Chain Fatty Acids Improve Cognitive Function in Intensively Treated Type 1 Diabetic Patients and Support In Vitro Synaptic Transmission During Acute Hypoglycemia

(2009) K. A. Page et al.   DIABETES

Transcription Factors in Long-Term Memory and Synaptic Plasticity

(2009) Cristina M. Alberini   PHYSIOLOGICAL REVIEWS

Genetic Dissociation of Ethanol Sensitivity and Memory Formation in Drosophila melanogaster

(2008) H. LaFerriere et al.   GENETICS