Vision-dependent specification of cell types and function in the developing cortex

Spatial Transcriptomics: Molecular Maps of the Mammalian Brain

(2021) Cantin Ortiz et al.   Annual Review of Neuroscience

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

(2021) Zizhen Yao et al.   CELL

Vision is required for the formation of binocular neurons prior to the classical critical period

(2021) Liming Tan et al.   CURRENT BIOLOGY

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

(2021) Zizhen Yao et al.   NATURE

Human neocortical expansion involves glutamatergic neuron diversification

(2021) Jim Berg et al.   NATURE

A multimodal cell census and atlas of the mammalian primary motor cortex

(2021) et al.   NATURE

Cellular anatomy of the mouse primary motor cortex

(2021) Rodrigo Muñoz-Castañeda et al.   NATURE

Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH

(2021) Meng Zhang et al.   NATURE

Synaptic Specificity, Recognition Molecules, and Assembly of Neural Circuits

(2020) Joshua R. Sanes et al.   CELL

Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population

(2020) Euiseok J. Kim et al.   NEURON

Critical period regulation across multiple timescales

(2020) Rebecca K. Reh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Human IgSF Cell-Surface Interactome Reveals a Complex Network of Protein-Protein Interactions

(2020) Woj M. Wojtowicz et al.   CELL

A community-based transcriptomics classification and nomenclature of neocortical cell types

(2020) Rafael Yuste et al.   NATURE NEUROSCIENCE

Circuitry Underlying Experience-Dependent Plasticity in the Mouse Visual System

(2020) Bryan M. Hooks et al.   NEURON

Vision Changes the Cellular Composition of Binocular Circuitry during the Critical Period

(2020) Liming Tan et al.   NEURON

Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala

(2020) Timothy P O'Leary et al.   eLife

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

(2019) Yi-Rong Peng et al.   CELL

SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues

(2019) Jocelyn Y. Kishi et al.   NATURE METHODS

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

(2019) Samuel L. Wolock et al.   Cell Systems

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Classification of electrophysiological and morphological neuron types in the mouse visual cortex

(2019) Nathan W. Gouwens et al.   NATURE NEUROSCIENCE

Structured spike series specify gene expression patterns for olfactory circuit formation

(2019) Ai Nakashima et al.   SCIENCE

Area-Specific Mapping of Binocular Disparity across Mouse Visual Cortex

(2019) Alessandro La Chioma et al.   CURRENT BIOLOGY

Fast, sensitive and accurate integration of single-cell data with Harmony

(2019) Ilya Korsunsky et al.   NATURE METHODS

Dense connectomic reconstruction in layer 4 of the somatosensory cortex

(2019) Alessandro Motta et al.   SCIENCE

Continuous Variation within Cell Types of the Nervous System

(2018) Mark S. Cembrowski et al.   TRENDS IN NEUROSCIENCES

CellProfiler 3.0: Next-generation image processing for biology

(2018) Claire McQuin et al.   PLOS BIOLOGY

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

(2018) Philipp Berens et al.   PLoS Computational Biology

Single cell molecular alterations reveal target cells and pathways of concussive brain injury

(2018) Douglas Arneson et al.   Nature Communications

The Microtubule Regulator NEK7 Coordinates the Wiring of Cortical Parvalbumin Interneurons

(2018) Antonio Jesús Hinojosa et al.   Cell Reports

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Segregated Subnetworks of Intracortical Projection Neurons in Primary Visual Cortex

(2018) Mean-Hwan Kim et al.   NEURON

IgSF9b regulates anxiety behaviors through effects on centromedial amygdala inhibitory synapses

(2018) Olga Babaev et al.   Nature Communications

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex

(2017) Sinisa Hrvatin et al.   NATURE NEUROSCIENCE

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Sensory experience regulates cortical inhibition by inducing IGF1 in VIP neurons

(2016) A. R. Mardinly et al.   NATURE

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

(2016) Bosiljka Tasic et al.   NATURE NEUROSCIENCE

Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons

(2016) Mark S. Cembrowski et al.   NEURON

Diffusion maps for high-dimensional single-cell analysis of differentiation data

(2015) Laleh Haghverdi et al.   BIOINFORMATICS

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Control of response reliability by parvalbumin-expressing interneurons in visual cortex

(2015) Yingjie Zhu et al.   Nature Communications

Emergence of Feature-Specific Connectivity in Cortical Microcircuits in the Absence of Visual Experience

(2014) H. Ko et al.   JOURNAL OF NEUROSCIENCE

The adhesion protein IgSF9b is coupled to neuroligin 2 via S-SCAM to promote inhibitory synapse development

(2013) Jooyeon Woo et al.   JOURNAL OF CELL BIOLOGY

The emergence of functional microcircuits in visual cortex

(2013) Ho Ko et al.   NATURE

Cortical connectivity and sensory coding

(2013) Kenneth D. Harris et al.   NATURE

Retinal waves coordinate patterned activity throughout the developing visual system

(2012) James B. Ackman et al.   NATURE

Development and Plasticity of the Primary Visual Cortex

(2012) J. Sebastian Espinosa et al.   NEURON

An Instructive Role for Patterned Spontaneous Retinal Activity in Mouse Visual Map Development

(2011) Hong-ping Xu et al.   NEURON

Critical Period Plasticity Matches Binocular Orientation Preference in the Visual Cortex

(2010) Bor-Shuen Wang et al.   NEURON

Synaptogenesis in the developing mouse visual cortex

(2009) Mingshan Li et al.   BRAIN RESEARCH BULLETIN

Gene expression patterns in visual cortex during the critical period: Synaptic stabilization and reversal by visual deprivation

(2008) A. W. Lyckman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA