DNA Aptamers Block the Receptor Binding Domain at the Spike Protein of SARS-CoV-2

A trimeric human angiotensin-converting enzyme 2 as an anti-SARS-CoV-2 agent

(2021) Tianshu Xiao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Polysulfates block SARS‐CoV‐2 uptake via electrostatic interactions

(2021) Chuanxiong Nie et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Detection of single DNA mismatches by force spectroscopy in short DNA hairpins

(2020) F. Landuzzi et al.   JOURNAL OF CHEMICAL PHYSICS

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

(2020) Roujian Lu et al.   LANCET

Structural basis for the recognition of the SARS-CoV-2 by full-length human ACE2

(2020) Renhong Yan et al.   SCIENCE

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

(2020) Daniel Wrapp et al.   SCIENCE

Systematic Comparison of Two Animal-to-Human Transmitted Human Coronaviruses: SARS-CoV-2 and SARS-CoV

(2020) Jiabao Xu et al.   Viruses-Basel

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein

(2020) Alexandra C. Walls et al.   CELL

Structure of the SARS-CoV-2 spike receptor-binding domain bound to the ACE2 receptor

(2020) Jun Lan et al.   NATURE

Structural basis of receptor recognition by SARS-CoV-2

(2020) Jian Shang et al.   NATURE

A DNA Aptamer Based Method for Detection of SARS-CoV-2 Nucleocapsid Protein

(2020) Zhiqiang Chen et al.   VIROLOGICA SINICA

Discovery of Aptamers Targeting the Receptor-Binding Domain of the SARS-CoV-2 Spike Glycoprotein

(2020) Yanling Song et al.   ANALYTICAL CHEMISTRY

Developing a Fully Glycosylated Full-Length SARS-CoV-2 Spike Protein Model in a Viral Membrane

(2020) Hyeonuk Woo et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Types of Assays for SARS-CoV-2 Testing: A Review

(2020) Marie C Smithgall et al.   Labmedicine

Enhanced receptor binding of SARS-CoV-2 through networks of hydrogen-bonding and hydrophobic interactions

(2020) Yingjie Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conformational transition of SARS-CoV-2 spike glycoprotein between its closed and open states

(2020) Mert Gur et al.   JOURNAL OF CHEMICAL PHYSICS

Analysis of the SARS-CoV-2 spike protein glycan shield reveals implications for immune recognition

(2020) Oliver C. Grant et al.   Scientific Reports

Beyond Shielding: The Roles of Glycans in the SARS-CoV-2 Spike Protein

(2020) Lorenzo Casalino et al.   ACS Central Science

Real-Time Conformational Dynamics of SARS-CoV-2 Spikes on Virus Particles

(2020) Maolin Lu et al.   Cell Host & Microbe

Three-dimensional modeling of single stranded DNA hairpins for aptamer-based biosensors

(2017) Iman Jeddi et al.   Scientific Reports

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes

(2016) G.C.P. van Zundert et al.   JOURNAL OF MOLECULAR BIOLOGY

Current approaches in SELEX: An update to aptamer selection technology

(2015) Mariia Darmostuk et al.   BIOTECHNOLOGY ADVANCES

Aptamers and SELEX in Chemistry & Biology

(2014) Michael Famulok et al.   CHEMISTRY & BIOLOGY

Computing the Free Energy along a Reaction Coordinate Using Rigid Body Dynamics

(2014) Peng Tao et al.   Journal of Chemical Theory and Computation

Twenty-five years of nucleic acid simulations

(2013) Thomas E. Cheatham et al.   BIOPOLYMERS

Protein Conformational Switches: From Nature to Design

(2012) Jeung-Hoi Ha et al.   CHEMISTRY-A EUROPEAN JOURNAL

Automated 3D structure composition for large RNAs

(2012) Mariusz Popenda et al.   NUCLEIC ACIDS RESEARCH

Frontiers in Molecular Dynamics Simulations of DNA

(2011) Alberto Pérez et al.   ACCOUNTS OF CHEMICAL RESEARCH

Molecular simulations of carbohydrates and protein–carbohydrate interactions: motivation, issues and prospects

(2010) Elisa Fadda et al.   DRUG DISCOVERY TODAY

g_wham—A Free Weighted Histogram Analysis Implementation Including Robust Error and Autocorrelation Estimates

(2010) Jochen S. Hub et al.   Journal of Chemical Theory and Computation

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Isolation of inhibitory RNA aptamers against severe acute respiratory syndrome (SARS) coronavirus NTPase/Helicase

(2007) Kyoung Jin Jang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Potent inhibition of human influenza H5N1 virus by oligonucleotides derived by SELEX

(2007) Congsheng Cheng et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS