The plant NADPH oxidase RBOHD is required for microbiota homeostasis in leaves

Mutual potentiation of plant immunity by cell-surface and intracellular receptors

(2021) Bruno Pok Man Ngou et al.   NATURE

Pattern-recognition receptors are required for NLR-mediated plant immunity

(2021) Minhang Yuan et al.   NATURE

A plant genetic network for preventing dysbiosis in the phyllosphere

(2020) Tao Chen et al.   NATURE

CRK2 and C-terminal Phosphorylation of NADPH Oxidase RBOHD Regulate Reactive Oxygen Species Production in Arabidopsis

(2020) Sachie Kimura et al.   PLANT CELL

Label or Concept – What Is a Pathobiont?

(2020) Lara Jochum et al.   TRENDS IN MICROBIOLOGY

Beyond pathogens: microbiota interactions with the plant immune system

(2019) Paulo José PL Teixeira et al.   CURRENT OPINION IN MICROBIOLOGY

Beneficial microbes going underground of root immunity

(2019) Ke Yu et al.   PLANT CELL AND ENVIRONMENT

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

(2019) Charlotte I. Carlström et al.   Nature Ecology & Evolution

Mechanistic insights into host adaptation, virulence and epidemiology of the phytopathogen Xanthomonas

(2019) Shi-Qi An et al.   FEMS MICROBIOLOGY REVIEWS

Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales

(2018) Talia L. Karasov et al.   Cell Host & Microbe

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana

(2018) Claudia Bartoli et al.   ISME Journal

Convergent and Divergent Signaling in PAMP-Triggered Immunity and Effector-Triggered Immunity

(2018) Yujun Peng et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome

(2018) Eric J. N. Helfrich et al.   Nature Microbiology

A bacterial endophyte from apoplast fluids protects canola plants from different phytopathogens via antibiosis and induction of host resistance

(2018) Fernando Matias Romero et al.   PHYTOPATHOLOGY

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants

(2018) Yasuhiro Kadota et al.   NEW PHYTOLOGIST

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

The receptor kinase FER is a RALF-regulated scaffold controlling plant immune signaling

(2017) Martin Stegmann et al.   SCIENCE

Dynamics of the human gut microbiome in inflammatory bowel disease

(2017) Jonas Halfvarson et al.   Nature Microbiology

A Mesh–Duox pathway regulates homeostasis in the insect gut

(2017) Xiaoping Xiao et al.   Nature Microbiology

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Using Ecology, Physiology, and Genomics to Understand Host Specificity inXanthomonas

(2016) Marie-Agnès Jacques et al.   Annual Review of Phytopathology

The Arabidopsis NADPH oxidasesRbohDandRbohFdisplay differential expression patterns and contributions during plant immunity

(2016) Jorge Morales et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bacteria establish an aqueous living space in plants crucial for virulence

(2016) Xiu-Fang Xin et al.   NATURE

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health

(2016) Christine Vogel et al.   NEW PHYTOLOGIST

The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen

(2016) Unyarat Ritpitakphong et al.   NEW PHYTOLOGIST

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity

(2015) Barbara Reinhold-Hurek et al.   Annual Review of Phytopathology

Understanding Plant Immunity as a Surveillance System to Detect Invasion

(2015) David E. Cook et al.   Annual Review of Phytopathology

Phylogenetic and Variable-Number Tandem-Repeat Analyses Identify Nonpathogenic Xanthomonas arboricola Lineages Lacking the Canonical Type III Secretion System

(2015) Salwa Essakhi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Increased Expression of DUOX2 Is an Epithelial Response to Mucosal Dysbiosis Required for Immune Homeostasis in Mouse Intestine

(2015) Helmut Grasberger et al.   GASTROENTEROLOGY

High levels of cyclic-di-GMP in plant-associated P seudomonas correlate with evasion of plant immunity

(2015) Sebastian Pfeilmeier et al.   MOLECULAR PLANT PATHOLOGY

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

The FLS2-Associated Kinase BIK1 Directly Phosphorylates the NADPH Oxidase RbohD to Control Plant Immunity

(2014) Lei Li et al.   Cell Host & Microbe

Direct Regulation of the NADPH Oxidase RBOHD by the PRR-Associated Kinase BIK1 during Plant Immunity

(2014) Yasuhiro Kadota et al.   MOLECULAR CELL

The gut microbiota engages different signaling pathways to induce Duox2 expression in the ileum and colon epithelium

(2014) F Sommer et al.   Mucosal Immunology

Genome-wide association study of Arabidopsis thaliana leaf microbial community

(2014) Matthew W. Horton et al.   Nature Communications

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Respiratory burst oxidases: the engines of ROS signaling

(2011) Nobuhiro Suzuki et al.   CURRENT OPINION IN PLANT BIOLOGY

Cell Wall Damage-Induced Lignin Biosynthesis Is Regulated by a Reactive Oxygen Species- and Jasmonic Acid-Dependent Process in Arabidopsis

(2011) L. Denness et al.   PLANT PHYSIOLOGY

Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection

(2011) R. Willmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual oxidase in the intestinal epithelium of zebrafish larvae has anti-bacterial properties

(2010) Maria Vega Flores et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

FERONIA Is a Key Modulator of Brassinosteroid and Ethylene Responsiveness in Arabidopsis Hypocotyls

(2010) Stephen D. Deslauriers et al.   Molecular Plant

PEPR2 Is a Second Receptor for the Pep1 and Pep2 Peptides and Contributes to Defense Responses in Arabidopsis

(2010) Y. Yamaguchi et al.   PLANT CELL

Ethylene Signaling Regulates Accumulation of the FLS2 Receptor and Is Required for the Oxidative Burst Contributing to Plant Immunity

(2010) Sophia Mersmann et al.   PLANT PHYSIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Dual Roles of Reactive Oxygen Species and NADPH Oxidase RBOHD in an Arabidopsis-Alternaria Pathosystem

(2009) M. Pogany et al.   PLANT PHYSIOLOGY

Network Properties of Robust Immunity in Plants

(2009) Kenichi Tsuda et al.   PLoS Genetics

Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species

(2008) Hideki Sumimoto   FEBS Journal

Identification of cell-wall stress as a hexose-dependent and osmosensitive regulator of plant responses

(2008) Thorsten Hamann et al.   PLANT JOURNAL