Article
Chemistry, Analytical
Xiaoying Cai, Dan Zhao, Xingrong Li, Qingyuan Zheng, Xiaojia Shu, Shijia Ding, Decai Zhang, Yurong Yan
Summary: A fluorometric biosensor based on CRISPR/Cas12a collateral cleavage has been developed for ultrasensitive and specific detection of FEN1 activity. The biosensing platform demonstrates excellent analytical performance and has been successfully applied for FEN1 detection in serums and cell lysates, suggesting potential clinical applications.
ANALYTICA CHIMICA ACTA
(2022)
Article
Chemistry, Physical
Jing Su, Yuqing Ke, Nokuzola Maboyi, Xiao Zhi, Sijia Yan, Fuwu Li, Bo Zhao, Xiaolong Jia, Shiping Song, Xianting Ding
Summary: The authors developed a CRISPR/Cas12a-powered DNA framework-supported electrochemical biosensing platform for ultrasensitive nucleic acid analysis without pre-amplification, showing incredible capability for sequence-specific targeting and detection.
Review
Chemistry, Analytical
Siyu Chen, Bo Gong, Cong Zhu, Chunyang Lei, Zhou Nie
Summary: Nucleic acid molecules possess attractive properties for biosensing and bioimaging due to their high designability and structural predictability. CRISPR-Cas systems, with high programmability and flexibility, recognize and cleave nucleic acid targets and have been engineered as multifunctional tools. Integration of nucleic acids with CRISPR-Cas systems has advanced biosensing and bioimaging methodologies, holding great promise in biochemical research and clinical diagnosis.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY
(2023)
Review
Chemistry, Analytical
Mariarosaria De Falco, Mariarita De Felice, Federica Rota, Daniele Zappi, Amina Antonacci, Viviana Scognamiglio
Summary: This article provides a comprehensive review of available methods for isothermal amplification of nucleic acids and their integration into different detection systems. It aims to improve the sensitivity, stability, and specificity of biosensor technology. The effective methodologies of nucleic acid isothermal amplification have been successfully applied to sensitive detection of viral and bacterial nucleic acids, even in low-resource settings.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY
(2022)
Article
Biotechnology & Applied Microbiology
Huawei Tong, Jia Huang, Qingquan Xiao, Bingbing He, Xue Dong, Yuanhua Liu, Xiali Yang, Dingyi Han, Zikang Wang, Wenqin Ying, Runze Zhang, Yu Wei, Xuchen Wang, Chunlong Xu, Yingsi Zhou, Yanfei Li, Minqing Cai, Qifang Wang, Mingxing Xue, Guoling Li, Kailun Fang, Hainan Zhang, Hui Yang
Summary: Several engineered Cas13 variants have been found to have efficient targeted degradation activity with reduced collateral effects in mammalian cells. These variants show no off-target effects and cell growth arrest, making them suitable for targeted RNA degradation in basic research and therapeutic applications.
NATURE BIOTECHNOLOGY
(2022)
Article
Multidisciplinary Sciences
Rammyani Bagchi, Rachel Tinker-Kulberg, Mohammad Salehin, Tinku Supakar, Sydney Chamberlain, Ayalew Ligaba-Osena, Eric A. Josephs
Summary: This study developed a strategy to design polyvalent gRNAs that can simultaneously target multiple viral sites with high activity, leading to superior antiviral elimination in higher organisms.
Article
Chemistry, Multidisciplinary
Min Zhou, Yao Yin, Yuyan Shi, Zhaoxin Huang, Yu Shi, Mei Chen, Guoliang Ke, Xiao-Bing Zhang
Summary: A stable and sensitive biosensor for ctDNA in complex biological fluid is developed in this study. By utilizing a spherical nucleic acid reporter and cascade CRISPR/Cas12a amplifier, stability and sensitivity are significantly improved.
CHEMICAL COMMUNICATIONS
(2022)
Article
Chemistry, Analytical
Jae Hoon Jeung, Hyogu Han, Chang Yeol Lee, Jun Ki Ahn
Summary: This study presents a technique using CRISPR/Cas12a for detecting 3'-5' exonuclease activity. The technique allows sensitive detection of Exo III activity and can be used for screening inhibitors.
Article
Food Science & Technology
Zefeng Mao, Ruipeng Chen, Xiaojuan Wang, Zixuan Zhou, Yuan Peng, Shuang Li, Dianpeng Han, Sen Li, Yu Wang, Tie Han, Jun Liang, Shuyue Ren, Zhixian Gao
Summary: The use of molecular detection in food safety has become urgent due to the detection of novel coronavirus events in the food cold chain. This review introduces a new molecular diagnostic technology based on CRISPR-Cas12a and summarizes its applications in various aspects of food safety. The biosensor analytical technology has great potential in qualitative and quantitative analysis of infectious pathogens.
TRENDS IN FOOD SCIENCE & TECHNOLOGY
(2022)
Review
Biotechnology & Applied Microbiology
Bing Chen, Ya Li, Feng Xu, Xiaonan Yang
Summary: This article reviews the recent advances in CRISPR-based biosensing techniques and their combination with microfluidic platforms. The advantages of CRISPR methods in nucleic acid detection and the applications of microfluidic chips in sample processing and analysis are discussed. The review also explores the various applications of these technologies in different fields.
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
(2022)
Article
Biochemical Research Methods
Yang Song, Ke Gao, Xiaoying Cai, Wei Cheng, Shijia Ding, Decai Zhang, Shixiong Deng
Summary: A controllable crRNA self-transcription aided dual-amplified CRISPR-Cas12a strategy, named CST-Cas12a, has been developed for highly sensitive and specific biosensing of flap endonuclease 1 (FEN1). This strategy utilizes a branched DNA probe as a hydrolysis substrate for FEN1, and generates double-stranded DNA (dsDNA) containing a T7 promoter and crRNA transcription template. With the help of T7 RNA polymerase, abundant crRNA is produced and assembled with Cas12a to form a Cas12a/crRNA complex. This complex can be activated by a dsDNA trigger and unlocks the fluorophore-quencher reporter cleavage, enabling highly efficient dual signal amplification and near-zero background. Under optimized conditions, the CST-Cas12a method allows highly sensitive biosensing of FEN1 activity with excellent specificity in the presence of other interfering enzymes. Furthermore, this strategy has been successfully applied to FEN1 biosensing in complex biological samples.
ACS SYNTHETIC BIOLOGY
(2022)
Article
Chemistry, Analytical
Decai Zhang, Yurong Yan, Xiaoxue Cheng, Tiantian Yang, Xingrong Li, Shijia Ding, Xiuming Zhang, Wei Cheng
Summary: This study investigated the trans-cleavage activity of CRISPR-Cas12a and revealed the influence of PAM nucleotides on its activation. The enhanced strand displacement mechanism by Cas12a to promote crRNA invasion was also demonstrated. Additionally, a modular CRISPR-Cas12a-based signal reporting system was developed for universal biosensing, enabling the detection of various analytes with high sensitivity and specificity.
SENSORS AND ACTUATORS B-CHEMICAL
(2022)
Article
Chemistry, Analytical
Tian Tian, Xiaoming Zhou
Summary: Biosensing based on CRISPR-Cas systems is a rapidly evolving technology that provides innovative tools for developing new-generation biosensing strategies. Various nucleic acid and non-nucleic acid detection methods have been developed based on the CRISPR platform. This review introduces the core biochemical properties of CRISPR bioassays and highlights recent efforts to improve sensitivity, quantification capabilities, multiplex assays, one-pot assays, advanced sensors, and extended applications. It also analyzes obstacles to the commercial application of CRISPR detection technology and explores development opportunities and directions.
ANNUAL REVIEW OF ANALYTICAL CHEMISTRY
(2023)
Article
Chemistry, Analytical
Ruobo Peng, Zhaochang Lu, Ming Liu, Fei Hu
Summary: In this study, a pressure-assisted and centrifugal-driven microfluidic chip was designed for detecting respiratory pathogens. The chip achieved high sensitivity and simultaneous detection of multiple targets, and could be stored for a long time through freeze-drying.
SENSORS AND ACTUATORS B-CHEMICAL
(2024)
Article
Biophysics
Hansol Kim, Seoyoung Lee, Junhyeok Yoon, Jayeon Song, Hyun Gyu Park
Summary: This study presents a novel method to identify protein/small molecule interactions utilizing the CRISPR/Cas12a system, successfully determining two model interactions at very low concentrations. The technique allows for rapid and simple detection of target proteins by measuring fluorescence signals. The practical applicability of this method was confirmed by reliably detecting target proteins in human serum samples.
BIOSENSORS & BIOELECTRONICS
(2021)
Article
Medicine, General & Internal
Qian He, Mengdi Bao, Kenneth Hass, Wenxia Lin, Peiwu Qin, Ke Du
Article
Biophysics
Qian He, Dongmei Yu, Mengdi Bao, Grant Korensky, Juhong Chen, Mingyeong Shin, Juwon Kim, Myeongkee Park, Peiwu Qin, Ke Du
BIOSENSORS & BIOELECTRONICS
(2020)
Article
Biochemical Research Methods
Grant Korensky, Xinye Chen, Mengdi Bao, Abbi Miller, Blanca Lapizco-Encinas, Myeongkee Park, Ke Du
Summary: A planar, transparent, and adaptable nanosieve device has been developed for efficient separation of microalgae and bacteria. This device can trap almost all microalgae cells while allowing bacteria cells to pass through, and is capable of single-cell auto-fluorescence tracking. It is a valuable method for purifying microalgae samples containing contaminations and studying single-cell heterogeneity.
Article
Nanoscience & Nanotechnology
Mengdi Bao, Erik Jensen, Yu Chang, Grant Korensky, Ke Du
ACS APPLIED MATERIALS & INTERFACES
(2020)
Article
Chemistry, Multidisciplinary
Kenneth N. Hass, Mengdi Bao, Qian He, Li Liu, Jiacheng He, Myeongkee Park, Peiwu Qin, Ke Du
Article
Optics
Rabeb Layouni, Michael Dubrovsky, Mengdi Bao, Haejun Chung, Ke Du, Svetlana Boriskina, Sharon M. Weiss, Diedrik Vermeulen
Summary: The experimental implementation of the high contrast cleavage detection (HCCD) mechanism using porous silicon (PSi) interferometer sensors demonstrated significant optical signal amplification. Results showed a clear path to achieving real-time, highly sensitive readout for a broad range of biological diagnostic assays via nucleic acid cleavage triggered by specific molecular binding events.
Article
Materials Science, Multidisciplinary
Li Liu, Zhiheng Xu, Kamel Awayda, Stephen J. Dollery, Mengdi Bao, Jianlin Fan, Denis Cormier, Mitchell O'Connell, Gregory J. Tobin, Ke Du
Summary: A gold nanoparticle-labeled CRISPR-Cas13a nucleic acid assay has been developed for sensitive solid-state nanopore sensing. This simplified assay enables rapid and portable nucleic acid biomarker detection without relying on thermal cyclers.
ADVANCED MATERIALS TECHNOLOGIES
(2022)
Article
Chemistry, Multidisciplinary
Yu Chang, Mengdi Bao, Jacob Waitkus, Haogang Cai, Ke Du
Summary: This study introduces a fully enclosed superhydrophobic-based optofluidics system created through micro-stereolithography. The research explores various microstructure cladding designs and finds that the T-type overhang design exhibits the lowest optical loss.
Article
Biochemical Research Methods
Mengdi Bao, Stephen J. Dollery, Fnu Yuqing, Gregory J. Tobin, Ke Du
Summary: In this study, a FRET-based biosensor combined with high-aspect-ratio microstructures and Cas12a-mediated trans-cleavage was developed for detecting HPV 16 DNA fragments. The results showed that micropillars with higher density exhibited superior molecular binding capabilities, leading to a tenfold increase in detection sensitivity. Additionally, a simple and effective approach was developed to mitigate bubble generation in microfluidic devices.
Review
Biochemical Research Methods
Mengdi Bao, Jacob Waitkus, Li Liu, Yu Chang, Zhiheng Xu, Peiwu Qin, Juhong Chen, Ke Du
Summary: This paper provides an overview of the current state-of-the-art systems for micro- and nano-scale approaches to detect HFVs, covering principles, diagnostic strategies, and future possibilities.
Article
Biochemical Research Methods
Mengdi Bao, Shuhuan Zhang, Chad ten Pas, Stephen J. Dollery, Ruth Bushnell, F. N. U. Yuqing, Rui Liu, Guoyu Lu, Gregory J. Tobin, Ke Du
Summary: A simple, portable, and low-cost microfluidic system, called FAST, has been developed as an integrated, power-free, and pipette-free biosensor for viral nucleic acids. This system uses water-soluble polyvinyl alcohol as the core material and manual operation, providing a promising tool for nucleic acid diagnostics.
Review
Biology
Garrett J. Soler, Mengdi Bao, Devina Jaiswal, Hitten P. Zaveri, Michael L. DiLuna, Ryan A. Grant, Kazunori Hoshino
YALE JOURNAL OF BIOLOGY AND MEDICINE
(2018)