Automated assignment of cell identity from single-cell multiplexed imaging and proteomic data
出版年份 2021 全文链接
标题
Automated assignment of cell identity from single-cell multiplexed imaging and proteomic data
作者
关键词
machine learning, highly mutliplexed imaging, tumor microenvironment, data analysis, computational biology, automated analysis
出版物
Cell Systems
Volume -, Issue -, Pages -
出版商
Elsevier BV
发表日期
2021-09-17
DOI
10.1016/j.cels.2021.08.012
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The single-cell pathology landscape of breast cancer
- (2020) Hartland W. Jackson et al. NATURE
- STARCH: Copy number and clone inference from spatial transcriptomics data
- (2020) Rebecca Elyanow et al. PHYSICAL BIOLOGY
- Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
- (2019) Dvir Aran et al. NATURE IMMUNOLOGY
- Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data
- (2019) George C. Linderman et al. NATURE METHODS
- Predicting cell populations in single cell mass cytometry data
- (2019) Tamim Abdelaal et al. CYTOMETRY PART A
- A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer
- (2019) Johanna Wagner et al. CELL
- Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ
- (2019) Joseph W Foley et al. GENOME RESEARCH
- Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling
- (2019) Allen W. Zhang et al. NATURE METHODS
- High-definition spatial transcriptomics for in situ tissue profiling
- (2019) Sanja Vickovic et al. NATURE METHODS
- The role of PD-L1 expression as a predictive biomarker: an analysis of all US Food and Drug Administration (FDA) approvals of immune checkpoint inhibitors
- (2019) Andrew A. Davis et al. Journal for ImmunoTherapy of Cancer
- Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
- (2018) Elham Azizi et al. CELL
- scmap: projection of single-cell RNA-seq data across data sets
- (2018) Vladimir Yu Kiselev et al. NATURE METHODS
- Highly multiplexed immunofluorescence imaging of human tissues and tumors using t-CyCIF and conventional optical microscopes
- (2018) Jia-Ren Lin et al. eLife
- A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging
- (2018) Leeat Keren et al. CELL
- Single Cell Transcriptomics of Pancreatic Cancer Precursors Demonstrates Epithelial and Microenvironmental Heterogeneity as an Early Event in Neoplastic Progression
- (2018) Vincent Bernard et al. CLINICAL CANCER RESEARCH
- Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance
- (2017) Sydney M. Shaffer et al. NATURE
- SCENIC: single-cell regulatory network inference and clustering
- (2017) Sara Aibar et al. NATURE METHODS
- histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data
- (2017) Denis Schapiro et al. NATURE METHODS
- Comprehensive single-cell transcriptional profiling of a multicellular organism
- (2017) Junyue Cao et al. SCIENCE
- Complex heatmaps reveal patterns and correlations in multidimensional genomic data
- (2016) Zuguang Gu et al. BIOINFORMATICS
- Mass Cytometry: Single Cells, Many Features
- (2016) Matthew H. Spitzer et al. CELL
- Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline
- (2016) Hao Chen et al. PLoS Computational Biology
- Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium
- (2016) Greg Finak et al. Scientific Reports
- Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis
- (2015) Jacob H. Levine et al. CELL
- FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
- (2015) Sofie Van Gassen et al. CYTOMETRY PART A
- Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data
- (2015) Kirsten E. Diggins et al. METHODS
- Multiplexed ion beam imaging of human breast tumors
- (2014) Michael Angelo et al. NATURE MEDICINE
- Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry
- (2014) Charlotte Giesen et al. NATURE METHODS
- GSVA: gene set variation analysis for microarray and RNA-Seq data
- (2013) Sonja Hänzelmann et al. BMC BIOINFORMATICS
- Myc and mTOR converge on a common node in protein synthesis control that confers synthetic lethality in Myc-driven cancers
- (2013) M. Pourdehnad et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-Cell Mass Cytometry of Differential Immune and Drug Responses Across a Human Hematopoietic Continuum
- (2011) S. C. Bendall et al. SCIENCE
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