The Succession of Bacterial Community Structure in Groundwater from a 250-m Gallery in the Horonobe Underground Research Laboratory

A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions

(2014) R. John Parkes et al.   MARINE GEOLOGY

Redox Buffer Capacity in Water-Rock-Microbe Interaction Systems in Subsurface Environments

(2012) Yuki Amano et al.   GEOMICROBIOLOGY JOURNAL

Microbiological influences on fracture surfaces of intact mudstone and the implications for geological disposal of radioactive waste

(2012) H. Harrison et al.   MINERALOGICAL MAGAZINE

Virtual metagenome reconstruction from 16S rRNA gene sequences

(2012) Shujiro Okuda et al.   Nature Communications

Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads

(2011) Andrea K. Bartram et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Interpretation of undisturbed hydrogeochemical conditions in Neogene sediments of the Horonobe area, Hokkaido, Japan

(2011) Hiroshi Sasamoto et al.   APPLIED GEOCHEMISTRY

Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea)

(2011) S. GRÜNKE et al.   Geobiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Abundance and Diversity of Biofilms in Natural and Artificial Aquifers of the Äspö Hard Rock Laboratory, Sweden

(2010) Sara Jägevall et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Subseafloor microbial communities associated with rapid turbidite deposition in the Gulf of Mexico continental slope (IODP Expedition 308)

(2009) Takuro Nunoura et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial and Archaeal 16S rRNA Genes in Late Pleistocene to Holocene Muddy Sediments from the Kanto Plain of Japan

(2009) Mio Takeuchi et al.   GEOMICROBIOLOGY JOURNAL

Stappia indica sp. nov., isolated from deep seawater of the Indian Ocean

(2009) Q. Lai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Unique distribution of deep groundwater bacteria constrained by geological setting

(2009) Kenji Kato et al.   Environmental Microbiology Reports

Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes

(2008) D. Yu. Sorokin et al.   EXTREMOPHILES

Comparison of deep-sea sediment microbial communities in the Eastern Mediterranean

(2008) Sander K. Heijs et al.   FEMS MICROBIOLOGY ECOLOGY

Azonexus hydrophilus sp. nov., a nifH gene-harbouring bacterium isolated from freshwater

(2008) J.-H. Chou et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Scale effect and heterogeneity of hydraulic conductivity of sedimentary rocks at Horonobe URL site

(2008) Hiroshi Kurikami et al.   PHYSICS AND CHEMISTRY OF THE EARTH

Extending the Sub-Sea-Floor Biosphere

(2008) E. G. Roussel et al.   SCIENCE