Detecting differential growth of microbial populations with Gaussian process regression

BRAID: A Unifying Paradigm for the Analysis of Combined Drug Action

(2016) Nathaniel R. Twarog et al.   Scientific Reports

General Stress Signaling in the Alphaproteobacteria

(2015) Aretha Fiebig et al.   Annual Review of Genetics

Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences

(2015) Horia Todor et al.   PLoS One

An automated fitting procedure and software for dose-response curves with multiphasic features

(2015) Giovanni Y. Di Veroli et al.   Scientific Reports

A Regulatory Hierarchy Controls the Dynamic Transcriptional Response to Extreme Oxidative Stress in Archaea

(2015) Peter D. Tonner et al.   PLoS Genetics

Bayesian modeling of bacterial growth for multiple populations

(2014) A. Paula Palacios et al.   Annals of Applied Statistics

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins

(2014) Christopher L Plaisier et al.   BMC Systems Biology

A transcription factor links growth rate and metabolism in the hypersaline adapted archaeonHalobacterium salinarum

(2014) Horia Todor et al.   MOLECULAR MICROBIOLOGY

A system-level model for the microbial regulatory genome

(2014) A. N. Brooks et al.   Molecular Systems Biology

Mojo Hand, a TALEN design tool for genome editing applications

(2013) Kevin L Neff et al.   BMC BIOINFORMATICS

A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen

(2013) Sung Ho Yoon et al.   GENOME RESEARCH

Regulation of Iron Metabolism by Pyrococcus furiosus

(2013) Y. Zhu et al.   JOURNAL OF BACTERIOLOGY

Coordination of bacterial proteome with metabolism by cyclic AMP signalling

(2013) Conghui You et al.   NATURE

A statin-dependent QTL for GATM expression is associated with statin-induced myopathy

(2013) Lara M. Mangravite et al.   NATURE

Protein-DNA binding dynamics predict transcriptional response to nutrients in archaea

(2013) H. Todor et al.   NUCLEIC ACIDS RESEARCH

The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon

(2012) Kriti Sharma et al.   BMC GENOMICS

Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System

(2012) J. Verghese et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Studying and modelling dynamic biological processes using time-series gene expression data

(2012) Ziv Bar-Joseph et al.   NATURE REVIEWS GENETICS

Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods

(2012) Nathan E. Lewis et al.   NATURE REVIEWS MICROBIOLOGY

On Models of the Temperature Effect on the Rate of Chemical Reactions and Biological Processes in Foods

(2012) Christina S. Barsa et al.   Food Engineering Reviews

Python for Scientists and Engineers

(2011) K. Jarrod Millman et al.   COMPUTING IN SCIENCE & ENGINEERING

Microbial Growth Curves: What the Models Tell Us and What They Cannot

(2011) Micha Peleg et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Parallel evolution of transcriptome architecture during genome reorganization

(2011) S. H. Yoon et al.   GENOME RESEARCH

A random effect multiplicative heteroscedastic model for bacterial growth

(2010) Ricardo Cao et al.   BMC BIOINFORMATICS

Phenotypic Landscape of a Bacterial Cell

(2010) Robert J. Nichols et al.   CELL

Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon

(2010) Amy K. Schmid et al.   NUCLEIC ACIDS RESEARCH

Management of Oxidative Stress inBacillus

(2009) Peter Zuber   Annual Review of Microbiology

A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability

(2009) Amy K Schmid et al.   Molecular Systems Biology

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Bayesian statistical methods for genetic association studies

(2009) Matthew Stephens et al.   NATURE REVIEWS GENETICS

Biomass estimation in batch biotechnological processes by Bayesian Gaussian process regression

(2008) Fernando di Sciascio et al.   COMPUTERS & CHEMICAL ENGINEERING

Slow Growth Induces Heat-Shock Resistance in Normal and Respiratory-deficient Yeast

(2008) Charles Lu et al.   MOLECULAR BIOLOGY OF THE CELL