The Genome and Methylome of a Subsocial Small Carpenter Bee,Ceratina calcarata

Characterization of pollen and bacterial community composition in brood provisions of a small carpenter bee

(2016) Quinn S. McFrederick et al.   MOLECULAR ECOLOGY

Transcriptional profiling of overwintering gene expression in the small carpenter bee, Ceratina calcarata

(2015) Dusty R. Durant et al.   APIDOLOGIE

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Recent and rapid diversification of the small carpenter bees in eastern North America

(2015) Wyatt A. Shell et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

DNA Methylation and Chromatin Organization in Insects: Insights from the Ant Camponotus floridanus

(2015) Karl M. Glastad et al.   Genome Biology and Evolution

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

(2015) Itamar Sela et al.   NUCLEIC ACIDS RESEARCH

Genomic signatures of evolutionary transitions from solitary to group living

(2015) K. M. Kapheim et al.   SCIENCE

Climbing the social ladder: the molecular evolution of sociality

(2015) Sandra M. Rehan et al.   TRENDS IN ECOLOGY & EVOLUTION

Transfer of Immunity from Mother to Offspring Is Mediated via Egg-Yolk Protein Vitellogenin

(2015) Heli Salmela et al.   PLoS Pathogens

The genomes of two key bumblebee species with primitive eusocial organization

(2015) Ben M Sadd et al.   GENOME BIOLOGY

The potential role of adiponectin- and resistin-like peptides in the regulation of lipid levels in the hemolymph of over-wintering adult females of Osmia bicornis

(2014) Oskar Wasielewski et al.   APIDOLOGIE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

At the brink of eusociality: transcriptomic correlates of worker behaviour in a small carpenter bee

(2014) Sandra M Rehan et al.   BMC EVOLUTIONARY BIOLOGY

A few steps forward and no steps back: long-distance dispersal patterns in small carpenter bees suggest major barriers to back-dispersal

(2014) Sandra Rehan et al.   JOURNAL OF BIOGEOGRAPHY

Eusocial insects as emerging models for behavioural epigenetics

(2014) Hua Yan et al.   NATURE REVIEWS GENETICS

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software

(2014) Evgenia V. Kriventseva et al.   NUCLEIC ACIDS RESEARCH

Molecular traces of alternative social organization in a termite genome

(2014) Nicolas Terrapon et al.   Nature Communications

L_RNA_scaffolder: scaffolding genomes with transcripts

(2013) Wei Xue et al.   BMC GENOMICS

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

(2013) D. F. Simola et al.   GENOME RESEARCH

The Function of Intragenic DNA Methylation: Insights from Insect Epigenomes

(2013) B. G. Hunt et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

(2013) H. Li-Byarlay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Honey constituents up-regulate detoxification and immunity genes in the western honey bee Apis mellifera

(2013) W. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes

(2013) Sarah D Kocher et al.   GENOME BIOLOGY

REAPR: a universal tool for genome assembly evaluation

(2013) Martin Hunt et al.   GENOME BIOLOGY

The Evolution of Invertebrate Gene Body Methylation

(2012) S. Sarda et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reversible switching between epigenetic states in honeybee behavioral subcastes

(2012) Brian R Herb et al.   NATURE NEUROSCIENCE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

A Mid-Cretaceous Origin of Sociality in Xylocopine Bees with Only Two Origins of True Worker Castes Indicates Severe Barriers to Eusociality

(2012) Sandra M. Rehan et al.   PLoS One

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

(2012) Haibin Xu et al.   PLoS One

Recombination is associated with the evolution of genome structure and worker behavior in honey bees

(2012) C. F. Kent et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

A high recombination rate in eusocial Hymenoptera: evidence from the common wasp Vespula vulgaris

(2011) Anu Sirviö et al.   BMC GENETICS

The genome of the leaf-cutting antAcromyrmex echinatiorsuggests key adaptations to advanced social life and fungus farming

(2011) Sanne Nygaard et al.   GENOME RESEARCH

IRS and TOR nutrient-signaling pathways act via juvenile hormone to influence honey bee caste fate

(2011) N. S. Mutti et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

(2011) Sanjeev Shukla et al.   NATURE

The Antiquity and Evolutionary History of Social Behavior in Bees

(2011) Sophie Cardinal et al.   PLoS One

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

(2011) C. D. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome of the fire ant Solenopsis invicta

(2011) Y. Wurm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Draft genome of the red harvester ant Pogonomyrmex barbatus

(2011) C. R. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomic impact of 100 million years of social evolution in seven ant species

(2011) Jürgen Gadau et al.   TRENDS IN GENETICS

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

(2011) Garret Suen et al.   PLoS Genetics

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

(2010) M. Csuos   BIOINFORMATICS

Nesting biology and subsociality in Ceratina calcarata (Hymenoptera: Apidae)

(2010) Sandra M. Rehan et al.   CANADIAN ENTOMOLOGIST

PERILIPIN-Dependent Control of Lipid Droplet Structure and Fat Storage in Drosophila

(2010) Mathias Beller et al.   Cell Metabolism

Genomic Comparison of the Ants Camponotus floridanus and Harpegnathos saltator

(2010) R. Bonasio et al.   SCIENCE

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

(2010) Frank Lyko et al.   PLOS BIOLOGY

Phenotypic connections in surprising places

(2010) Bolan Linghu et al.   GENOME BIOLOGY

Molecular evolution of the major chemosensory gene families in insects

(2009) A Sánchez-Gracia et al.   HEREDITY

Evidence of Social Nesting in the Ceratina of Borneo (Hymenoptera: Apidae)

(2009) Sandra M. Rehan et al.   JOURNAL OF THE KANSAS ENTOMOLOGICAL SOCIETY

One Giant Leap: How Insects Achieved Altruism and Colonial Life

(2008) Edward O. Wilson   BIOSCIENCE

Lipid stores, ovary development, and brain gene expression in Polistes metricus females

(2008) A. L. Toth et al.   INSECTES SOCIAUX

Nutritional Control of Reproductive Status in Honeybees via DNA Methylation

(2008) R. Kucharski et al.   SCIENCE