The Variable Regions ofLactobacillus rhamnosusGenomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires

Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling

(2015) Corina Ceapa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Probiotic Attributes of Autochthonous Lactobacillus rhamnosus Strains of Human Origin

(2014) Sheetal Pithva et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Probiotic Lactobacillus rhamnosus Inhibits the Formation of Neutrophil Extracellular Traps

(2014) L. Vong et al.   JOURNAL OF IMMUNOLOGY

Sequencing depth and coverage: key considerations in genomic analyses

(2014) David Sims et al.   NATURE REVIEWS GENETICS

Extracellular Vesicles Modulate Host-Microbe Responses by Altering TLR2 Activity and Phagocytosis

(2014) Jeroen van Bergenhenegouwen et al.   PLoS One

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

(2014) Claire Chewapreecha et al.   PLoS Genetics

Comparative Genomic and Functional Analysis of Lactobacillus casei and Lactobacillus rhamnosus Strains Marketed as Probiotics

(2013) François P. Douillard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genotypic adaptations associated with prolonged persistence ofLactobacillus plantarumin the murine digestive tract

(2013) Hermien van Bokhorst-van de Veen et al.   Biotechnology Journal

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Type I restriction enzymes and their relatives

(2013) W. A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

Highlights of the DNA cutters: a short history of the restriction enzymes

(2013) Wil A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

(2013) Auke J. van Heel et al.   NUCLEIC ACIDS RESEARCH

Lactobacillus paracasei Comparative Genomics: Towards Species Pan-Genome Definition and Exploitation of Diversity

(2013) Tamara Smokvina et al.   PLoS One

Genomic Adaptation of the Lactobacillus casei Group

(2013) Hidehiro Toh et al.   PLoS One

Comparative Genomic and Functional Analysis of 100 Lactobacillus rhamnosus Strains and Their Comparison with Strain GG

(2013) François P. Douillard et al.   PLoS Genetics

Characterization of the SpaCBA Pilus Fibers in the Probiotic Lactobacillus rhamnosus GG

(2012) Justus Reunanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Comparative analysis of the Oenococcus oeni pan genome reveals genetic diversity in industrially-relevant pathways

(2012) Anthony R Borneman et al.   BMC GENOMICS

Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation

(2012) Jeff R Broadbent et al.   BMC GENOMICS

Evolving Concepts of Bacterial Species

(2012) Timothy G. Barraclough et al.   Evolutionary Biology

The quest for probiotic effector molecules—Unraveling strain specificity at the molecular level

(2012) I-Chiao Lee et al.   PHARMACOLOGICAL RESEARCH

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection

(2012) S. Fanning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic and proteomic adaptation ofLactobacillus rhamnosusstrains during growth under cheese-like environmental conditions compared to de Man, Rogosa, and Sharpe medium

(2012) Claudio Giorgio Bove et al.   PROTEOMICS

Phages of lactic acid bacteria: The role of genetics in understanding phage-host interactions and their co-evolutionary processes

(2012) Jennifer Mahony et al.   VIROLOGY

Unique secreted-surface protein complex ofLactobacillus rhamnosus, identified by phage display

(2012) Dragana Gagic et al.   MicrobiologyOpen

Functional Characterization of a Mucus-Specific LPXTG Surface Adhesin from Probiotic Lactobacillus rhamnosus GG

(2011) Ingemar von Ossowski et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Low-coverage sequencing: Implications for design of complex trait association studies

(2011) Y. Li et al.   GENOME RESEARCH

Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae

(2011) Vincent P. Richards et al.   INFECTION GENETICS AND EVOLUTION

Complete Resequencing and Reannotation of the Lactobacillus plantarum WCFS1 Genome

(2011) R. J. Siezen et al.   JOURNAL OF BACTERIOLOGY

Naturally occurring single amino acid replacements in a regulatory protein alter streptococcal gene expression and virulence in mice

(2011) Ronan K. Carroll et al.   JOURNAL OF CLINICAL INVESTIGATION

Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera

(2011) Oksana Lukjancenko et al.   MICROBIAL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Interaction of orally administered Lactobacillus rhamnosus GG with skin and gut microbiota and humoral immunity in infants with atopic dermatitis

(2010) M. Nermes et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Characterization of MabA, a modulator ofLactobacillus rhamnosusGG adhesion and biofilm formation

(2010) Mónica Perea Vélez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Evaluation of genetic polymorphism among Lactobacillus rhamnosus non-starter Parmigiano Reggiano cheese strains

(2010) Claudio Giorgio Bove et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Complete Genome Sequence of Lactobacillus casei Zhang, a New Probiotic Strain Isolated from Traditional Homemade Koumiss in Inner Mongolia, China

(2010) W. Zhang et al.   JOURNAL OF BACTERIOLOGY

Adhesive Properties, Extracellular Protein Production, and Metabolism in the Lactobacillus rhamnosus GG Strain when Grown in the Presence of Mucin

(2010) Borja Sanchez   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Functional Analysis of the p40 and p75 Proteins from Lactobacillus casei BL23

(2010) Christine Bäuerl et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Comparative genomics of Lactobacillus

(2010) Ravi Kant et al.   Microbial Biotechnology

In Silico Prediction of Horizontal Gene Transfer Events in Lactobacillus bulgaricus and Streptococcus thermophilus Reveals Protocooperation in Yogurt Manufacturing

(2009) M. Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase

(2009) S. Lebeer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome of a virulent bacteriophage Lb338-1 that lyses the probiotic Lactobacillus paracasei cheese strain

(2009) Debebe Alemayehu et al.   GENE

Complete Genome Sequence of the Probiotic Lactobacillus rhamnosus ATCC 53103

(2009) H. Morita et al.   JOURNAL OF BACTERIOLOGY

The dlt Operon of Bacillus cereus Is Required for Resistance to Cationic Antimicrobial Peptides and for Virulence in Insects

(2009) Z. Abi Khattar et al.   JOURNAL OF BACTERIOLOGY

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

(2009) M. Kankainen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Population and Evolutionary Dynamics of Homologous Gene Recombination in Bacteria

(2009) Bruce R. Levin et al.   PLoS Genetics

Detection, Localization, and Conformational Analysis of Single Polysaccharide Molecules on Live Bacteria

(2008) Grégory Francius et al.   ACS Nano

Genome Sequence and Characteristics of Lrm1, a Prophage from Industrial Lactobacillus rhamnosus Strain M1

(2008) E. Durmaz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The mechanisms of carbon catabolite repression in bacteria

(2008) Josef Deutscher   CURRENT OPINION IN MICROBIOLOGY

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

(2008) S. J. J. Brouns et al.   SCIENCE

Global transcriptional response of Lactobacillus reuteri to the sourdough environment

(2008) Eric Hüfner et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Folding thermodynamics and kinetics of the leucine-rich repeat domain of the virulence factor Internalin B

(2007) Naomi Courtemanche et al.   PROTEIN SCIENCE