Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices

Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

(2020) Cheng Zou et al.   Nature Communications

A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction

(2020) Sarah E. Jensen et al.   Plant Genome

Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava

(2020) Ismail Yusuf Rabbi et al.   PLANT MOLECULAR BIOLOGY

Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression

(2019) Antoine Allier et al.   G3-Genes Genomes Genetics

Bayesian analysis and prediction of hybrid performance

(2019) Filipe Couto Alves et al.   Plant Methods

Multi-trait Improvement by Predicting Genetic Correlations in Breeding Crosses

(2019) Jeffrey L. Neyhart et al.   G3-Genes Genomes Genetics

Historical Introgressions from a Wild Relative of Modern Cassava Improved Important Traits and May Be Under Balancing Selection

(2019) Marnin D. Wolfe et al.   GENETICS

Breeding Top Genotypes and Accelerating Response to Recurrent Selection by Selecting Parents with Greater Gametic Variance

(2019) Piter Bijma et al.   GENETICS

Cassava yield traits predicted by genomic selection methods

(2019) Luciano Rogério Braatz de Andrade et al.   PLoS One

Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection

(2019) Antoine Allier et al.   Frontiers in Genetics

AlphaMate: a program for optimizing selection, maintenance of diversity and mate allocation in breeding programs

(2018) Gregor Gorjanc et al.   BIOINFORMATICS

Genomic Model with Correlation Between Additive and Dominance Effects

(2018) Tao Xiang et al.   GENETICS

Genomic Model with Correlation Between Additive and Dominance Effects

(2018) Tao Xiang et al.   GENETICS

Non-additive Effects in Genomic Selection

(2018) Luis Varona et al.   Frontiers in Genetics

Multi-objective optimized genomic breeding strategies for sustainable food improvement

(2018) Deniz Akdemir et al.   HEREDITY

A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data

(2018) Ariel W. Chan et al.   BMC BIOINFORMATICS

Training Population Optimization for Prediction of Cassava Brown Streak Disease Resistance in West African Clones

(2018) Alfred Ozimati et al.   G3-Genes Genomes Genetics

Prediction of Means and Variances of Crosses With Genome-Wide Marker Effects in Barley

(2018) Tanja Osthushenrich et al.   Frontiers in Plant Science

Genetic Gain Increases by Applying the Usefulness Criterion with Improved Variance Prediction in Selection of Crosses

(2017) Christina Lehermeier et al.   GENETICS

Genomic variance estimates: With or without disequilibrium covariances?

(2017) C. Lehermeier et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation

(2017) Punna Ramu et al.   NATURE GENETICS

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

(2017) John M Hickey et al.   NATURE GENETICS

Improving Genomic Prediction in Cassava Field Experiments Using Spatial Analysis

(2017) Ani A. Elias et al.   G3-Genes Genomes Genetics

Genome-Wide Association Mapping of Correlated Traits in Cassava: Dry Matter and Total Carotenoid Content

(2017) Ismail Y. Rabbi et al.   Plant Genome

Prospects for Genomic Selection in Cassava Breeding

(2017) Marnin D. Wolfe et al.   Plant Genome

Genetic Gain Increases by Applying the Usefulness Criterion with Improved Variance Prediction in Selection of Crosses

(2017) Christina Lehermeier et al.   GENETICS

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Diallel analysis of provitamin A carotenoid and dry matter content in cassava (Manihot esculenta Crantz)

(2016) Williams Esuma et al.   BREEDING SCIENCE

Inbreeding depression in cassava for productive traits

(2016) Juan Paulo Xavier de Freitas et al.   EUPHYTICA

Marker-Based Estimates Reveal Significant Non-additive Effects in Clonally Propagated Cassava (Manihot esculenta): Implications for the Prediction of Total Genetic Value and the Selection of Varieties

(2016) M. D. Wolfe et al.   G3-Genes Genomes Genetics

Genome-Wide Association and Prediction Reveals Genetic Architecture of Cassava Mosaic Disease Resistance and Prospects for Rapid Genetic Improvement

(2016) Marnin D. Wolfe et al.   Plant Genome

Efficient Breeding by Genomic Mating

(2016) Deniz Akdemir et al.   Frontiers in Genetics

Genetic contributions and their optimization

(2015) J.A. Woolliams et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genomic Heritability: What Is It?

(2015) Gustavo de los Campos et al.   PLoS Genetics

A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness

(2014) Jared O'Connell et al.   PLoS Genetics

Relatedness and Genotype × Environment Interaction Affect Prediction Accuracies in Genomic Selection: A Study in Cassava

(2013) Delphine Ly et al.   CROP SCIENCE

On the Additive and Dominant Variance and Covariance of Individuals Within the Genomic Selection Scope

(2013) Z. G. Vitezica et al.   GENETICS

Genome-wide selection in cassava

(2012) Eder Jorge de Oliveira et al.   EUPHYTICA

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE