Pulse Frequency in Crop Rotations Alters Soil Microbial Community Networks and the Relative Abundance of Fungal Plant Pathogens

Intercropping of grain legumes and cereals improves the use of soil N resources and reduces the requirement for synthetic fertilizer N: A global-scale analysis

(2020) Erik Steen Jensen et al.   Agronomy for Sustainable Development

Economics of pulse crop frequency and sequence in a wheat‐based rotation

(2020) Mohammad Khakbazan et al.   AGRONOMY JOURNAL

Strength of species interactions determines biodiversity and stability in microbial communities

(2020) Christoph Ratzke et al.   Nature Ecology & Evolution

High abundance of Ralstonia solanacearum changed tomato rhizosphere microbiome and metabolome

(2020) Tao Wen et al.   BMC PLANT BIOLOGY

Keeping it cool: Soil sample cold pack storage and DNA shipment up to 1 month does not impact metabarcoding results

(2020) Camille S. Delavaux et al.   Ecology and Evolution

The Impacts of Domestication and Breeding on Nitrogen Fixation Symbiosis in Legumes

(2020) Jinge Liu et al.   Frontiers in Genetics

Nitrogen in the environment

(2019) Carly J. Stevens   SCIENCE

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Intensifying crop rotations with pulse crops enhances system productivity and soil organic carbon in semi-arid environments

(2019) Kui Liu et al.   FIELD CROPS RESEARCH

Re-designing organic grain legume cropping systems using systems agronomy

(2019) Moritz Reckling et al.   EUROPEAN JOURNAL OF AGRONOMY

Does crop rotation yield more in China? A meta-analysis

(2019) Jie Zhao et al.   FIELD CROPS RESEARCH

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

High frequency cropping of pulses modifies soil nitrogen level and the rhizosphere bacterial microbiome in 4-year rotation systems of the semiarid prairie

(2018) Chantal Hamel et al.   APPLIED SOIL ECOLOGY

Keystone taxa predict compositional change in microbial communities

(2018) Cristina M. Herren et al.   ENVIRONMENTAL MICROBIOLOGY

Global negative effects of nitrogen deposition on soil microbes

(2018) Tian’an Zhang et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Compatibility between Legumes and Rhizobia for the Establishment of a Successful Nitrogen-Fixing Symbiosis

(2018) et al.   Genes

Network hubs in root-associated fungal metacommunities

(2018) Hirokazu Toju et al.   Microbiome

Plant cultivars imprint the rhizosphere bacterial community composition and association networks

(2017) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Diversity and co-occurrence network of soil fungi are more responsive than those of bacteria to shifts in precipitation seasonality in a subtropical forest

(2017) Dan He et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cover crops support ecological intensification of arable cropping systems

(2017) Raphaël A. Wittwer et al.   Scientific Reports

Comparing crop rotations between organic and conventional farming

(2017) Pietro Barbieri et al.   Scientific Reports

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

The impact of crop rotation on soil microbial diversity: A meta-analysis

(2016) Zander Samuel Venter et al.   PEDOBIOLOGIA

Fungal diversity associated with pulses and its influence on the subsequent wheat crop in the Canadian prairies

(2016) A. Navarro Borrell et al.   PLANT AND SOIL

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Estimating diversity via frequency ratios

(2015) Amy Willis et al.   BIOMETRICS

Diversifying crop rotations with pulses enhances system productivity

(2015) Yantai Gan et al.   Scientific Reports

Long-term effects of mineral fertilizers on soil microorganisms – A review

(2014) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

CropRota – A crop rotation model to support integrated land use assessments

(2011) Martin Schönhart et al.   EUROPEAN JOURNAL OF AGRONOMY

Nitrogen and sulphur management: challenges for organic sources in temperate agricultural systems

(2010) A.M. McNeill et al.   SOIL USE AND MANAGEMENT

How nitrate leaching from agricultural lands provokes phosphate eutrophication in groundwater fed wetlands: the sulphur bridge

(2009) Alfons J. P. Smolders et al.   BIOGEOCHEMISTRY

Break crop benefits in temperate wheat production

(2008) John Kirkegaard et al.   FIELD CROPS RESEARCH

Seasonal changes in the soil microbial community in a grassland plant diversity gradient four years after establishment

(2008) Maike Habekost et al.   SOIL BIOLOGY & BIOCHEMISTRY