High Potential for Secondary Metabolite Production of Paracoccus marcusii CP157, Isolated From the Crustacean Cancer pagurus

Potentially pathogenic bacteria isolated from diverse habitats in Spitsbergen, Svalbard

(2020) Diana C. Mogrovejo-Arias et al.   Environmental Earth Sciences

Streptomyces spp. From the Marine Sponge Antho dichotoma: Analyses of Secondary Metabolite Biosynthesis Gene Clusters and Some of Their Products

(2020) Jaime Felipe Guerrero-Garzón et al.   Frontiers in Microbiology

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria

(2019) Elham Karimi et al.   Scientific Reports

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Biosynthesis, characterization and antibacterial activity of silver nanoparticles by the Arctic anti-oxidative bacterium Paracoccus sp. Arc7-R13

(2019) Zheng Zhang et al.   Artificial Cells Nanomedicine and Biotechnology

Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria

(2019) Yu Zheng et al.   Frontiers in Microbiology

Complete genome sequence of Paracoccus sp. Arc7-R13, a silver nanoparticles synthesizing bacterium isolated from Arctic Ocean sediments

(2019) Shuang Li et al.   Marine Genomics

Diversity, Ecology, and Prevalence of Antimicrobials in Nature

(2019) Megan M. Mullis et al.   Frontiers in Microbiology

Diversity and flexibility of the bacterial communities on Cancer pagurus at different temperatures

(2019) Philipp Kraemer et al.   JOURNAL OF SEA RESEARCH

Diverse and Abundant Secondary Metabolism Biosynthetic Gene Clusters in the Genomes of Marine Sponge Derived Streptomyces spp. Isolates

(2018) Stephen Jackson et al.   Marine Drugs

Screening, purification and characterization of thermostable, protease resistant Bacteriocin active against methicillin resistant Staphylococcus aureus (MRSA)

(2018) Asma Ansari et al.   BMC MICROBIOLOGY

Genome mining reveals uncommon alkylpyrones as type III PKS products from myxobacteria

(2018) Joachim J. Hug et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Bioactive Secondary Metabolites from Octocoral-Associated Microbes—New Chances for Blue Growth

(2018) Inês Raimundo et al.   Marine Drugs

An Unprecedented Medium-Chain Diunsaturated N-acylhomoserine Lactone from Marine Roseobacter Group Bacteria

(2018) Lisa Ziesche et al.   Marine Drugs

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Genome Structure of the Opportunistic Pathogen Paracoccus yeei (Alphaproteobacteria) and Identification of Putative Virulence Factors

(2018) Robert Lasek et al.   Frontiers in Microbiology

Real-time PCR assay for Aquimarina macrocephali subsp. homaria and its distribution in shell disease lesions of Homarus americanus, Milne-Edwards, 1837, and environmental samples

(2017) Robert A. Quinn et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Investigating the Biosynthesis of Natural Products from Marine Proteobacteria: A Survey of Molecules and Strategies

(2017) et al.   Marine Drugs

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

Antimicrobial Potential of Bacteria Associated with Marine Sea Slugs from North Sulawesi, Indonesia

(2017) Nils Böhringer et al.   Frontiers in Microbiology

Exoproteome Analysis of the Seaweed Pathogen Nautella italica R11 Reveals Temperature-Dependent Regulation of RTX-Like Proteins

(2017) Melissa Gardiner et al.   Frontiers in Microbiology

Dual function of tropodithietic acid as antibiotic and signaling molecule in global gene regulation of the probiotic bacterium Phaeobacter inhibens

(2017) Paul G. Beyersmann et al.   Scientific Reports

Influence of Niche-Specific Nutrients on Secondary Metabolism in Vibrionaceae

(2016) Sonia Giubergia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

GC–MS Analysis of Bio-active Molecules Derived from Paracoccus pantotrophus FMR19 and the Antimicrobial Activity Against Bacterial Pathogens and MDROs

(2016) I. Faridha Begum et al.   INDIAN JOURNAL OF MICROBIOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios

(2016) Samantha M. Gromek et al.   Frontiers in Microbiology

Distribution and Genetic Diversity of Bacteriocin Gene Clusters in Rumen Microbial Genomes

(2015) Analice C. Azevedo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins

(2015) James T. Morton et al.   BMC BIOINFORMATICS

Genomic insight into Aquimarina longa SW024T: its ultra-oligotrophic adapting mechanisms and biogeochemical functions

(2015) Tingting Xu et al.   BMC GENOMICS

Comparative genomics and metabolic profiling of the genus Lysobacter

(2015) Irene de Bruijn et al.   BMC GENOMICS

Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria

(2015) Henrique Machado et al.   BMC GENOMICS

Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome ofMarinovum algicola DG898 exemplify functional compartmentalization

(2015) Oliver Frank et al.   ENVIRONMENTAL MICROBIOLOGY

The antimicrobial activity of heterotrophic bacteria isolated from the marine sponge Erylus deficiens (Astrophorida, Geodiidae)

(2015) Ana Patrícia Graça et al.   Frontiers in Microbiology

Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes

(2015) Michael Baym et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Characterisation of shell disease syndrome in the brown crab, Cancer pagurus, in a Discrete Irish Sea Fishery

(2014) Nathan G. King et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Quantification of polyketide synthase genes in tropical urban soils using real-time PCR

(2014) Thai-Hoang Le et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Atlas of nonribosomal peptide and polyketide biosynthetic pathways reveals common occurrence of nonmodular enzymes

(2014) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of NewN-Acylhomoserine Lactone Signalling Compounds ofDinoroseobacter shibaeDFL-12Tby Overexpression ofluxIGenes

(2013) Alexander Neumann et al.   CHEMBIOCHEM

Bacterial pathogens, virulence mechanism and host defence in marine macroalgae

(2013) Suhelen Egan et al.   ENVIRONMENTAL MICROBIOLOGY

Antimicrobial Peptides from Marine Proteobacteria

(2013) Florie Desriac et al.   Marine Drugs

Plasmids of Carotenoid-Producing Paracoccus spp. (Alphaproteobacteria) - Structure, Diversity and Evolution

(2013) Anna Maj et al.   PLoS One

Lesion bacterial communities in American lobsters with diet-induced shell disease

(2012) RA Quinn et al.   DISEASES OF AQUATIC ORGANISMS

Analysis of Antarctic proteobacteria by PCR fingerprinting and screening for antimicrobial secondary metabolites

(2012) L.-H. Lee et al.   GENETICS AND MOLECULAR RESEARCH

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Functional and Structural Analysis of the Siderophore Synthetase AsbB through Reconstitution of the Petrobactin Biosynthetic Pathway fromBacillus anthracis

(2012) Tyler D. Nusca et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Bacterial Communities Associated with Lesions of Shell Disease in the American Lobster,Homarus americanusMilne-Edwards

(2012) Andrei Y. Chistoserdov et al.   JOURNAL OF SHELLFISH RESEARCH

Pediocins: The bacteriocins of Pediococci. Sources, production, properties and applications

(2012) Maria Papagianni et al.   Microbial Cell Factories

Insights into the Transposable Mobilome of Paracoccus spp. (Alphaproteobacteria)

(2012) Lukasz Dziewit et al.   PLoS One

The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis

(2011) Mohammad R. Seyedsayamdost et al.   Nature Chemistry

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Growth phase-dependent global protein and metabolite profiles ofPhaeobacter gallaeciensisstrain DSM 17395, a member of the marineRoseobacter-clade

(2009) Hajo Zech et al.   PROTEOMICS

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY