Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes

Unraveling epigenomic abnormality in azoospermic human males by WGBS, RNA-Seq, and transcriptome profiling analyses

(2020) Xiaolong Wu et al.   JOURNAL OF ASSISTED REPRODUCTION AND GENETICS

Trajectory-based differential expression analysis for single-cell sequencing data

(2020) Koen Van den Berge et al.   Nature Communications

wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data

(2020) Marius Wöste et al.   BMC BIOINFORMATICS

The sperm epigenome does not display recurrent epimutations in patients with severely impaired spermatogenesis

(2020) Elsa Leitão et al.   Clinical Epigenetics

DNA methylation in human sperm: a systematic review

(2020) Fredrika Åsenius et al.   HUMAN REPRODUCTION UPDATE

Dissecting the epigenomic dynamics of human fetal germ cell development at single-cell resolution

(2020) Li Li et al.   CELL RESEARCH

The Neonatal and Adult Human Testis Defined at the Single-Cell Level

(2019) Abhishek Sohni et al.   Cell Reports

Cloning of a new testis-enriched gene C4orf22 and its role in cell cycle and apoptosis in mouse spermatogenic cells

(2019) Hui Li et al.   MOLECULAR BIOLOGY REPORTS

DNA methylation signatures of monozygotic twins clinically discordant for multiple sclerosis

(2019) Nicole Y. Souren et al.   Nature Communications

High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting

(2019) Sandra Laurentino et al.   Clinical Epigenetics

Recommendations for a nomenclature system for reporting methylation aberrations in imprinted domains

(2018) David Monk et al.   Epigenetics

Global delay in nascent strand DNA methylation

(2018) Jocelyn Charlton et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Global delay in nascent strand DNA methylation

(2018) Jocelyn Charlton et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis

(2018) Mei Wang et al.   Cell Stem Cell

Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte

(2018) Peter W. S. Hill et al.   NATURE

The adult human testis transcriptional cell atlas

(2018) Jingtao Guo et al.   CELL RESEARCH

The UCSC Genome Browser database: 2019 update

(2018) Maximilian Haeussler et al.   NUCLEIC ACIDS RESEARCH

Genenames.org: the HGNC and VGNC resources in 2019

(2018) Bryony Braschi et al.   NUCLEIC ACIDS RESEARCH

The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids

(2018) Brian P. Hermann et al.   Cell Reports

Single-cell gene expression analysis reveals diversity among human spermatogonia

(2017) N. Neuhaus et al.   MOLECULAR HUMAN REPRODUCTION

Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function

(2017) Christopher Schröder et al.   Epigenetics & Chromatin

De novo methylation in male germ cells of the common marmoset monkey occurs during postnatal development and is maintained in vitro

(2016) Daniel Langenstroth-Röwer et al.   Epigenetics

Transcription factors as readers and effectors of DNA methylation

(2016) Heng Zhu et al.   NATURE REVIEWS GENETICS

The germline-enriched Ppp1r36 promotes autophagy

(2016) Qinghua Zhang et al.   Scientific Reports

The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells

(2015) Fan Guo et al.   CELL

DNA Demethylation Dynamics in the Human Prenatal Germline

(2015) Sofia Gkountela et al.   CELL

A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development

(2015) Walfred W.C. Tang et al.   CELL

Transcription and imprinting dynamics in developing postnatal male germline stem cells

(2015) Saher Sue Hammoud et al.   GENES & DEVELOPMENT

Aberrant DNA methylation patterns of spermatozoa in men with unexplained infertility

(2015) Rocío G. Urdinguio et al.   HUMAN REPRODUCTION

Sperm calcineurin inhibition prevents mouse fertility with implications for male contraceptive

(2015) H. Miyata et al.   SCIENCE

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

The alternative role of DNA methylation in splicing regulation

(2015) Galit Lev Maor et al.   TRENDS IN GENETICS

Epigenetic heterogeneity of developmentally important genes in human sperm: Implications for assisted reproduction outcome

(2015) Juliane Kuhtz et al.   Epigenetics

Chromatin and Transcription Transitions of Mammalian Adult Germline Stem Cells and Spermatogenesis

(2014) Saher Sue Hammoud et al.   Cell Stem Cell

Epigenetic germline mosaicism in infertile men

(2014) Sandra Laurentino et al.   HUMAN MOLECULAR GENETICS

The DNA methylation landscape of human early embryos

(2014) Hongshan Guo et al.   NATURE

Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing

(2014) Michael J Ziller et al.   NATURE METHODS

Super-Enhancers in the Control of Cell Identity and Disease

(2013) Denes Hnisz et al.   CELL

A combined approach facilitates the reliable detection of human spermatogonia in vitro

(2013) N. Kossack et al.   HUMAN REPRODUCTION

Tagmentation-based whole-genome bisulfite sequencing

(2013) Qi Wang et al.   Nature Protocols

Identification of active regulatory regions from DNA methylation data

(2013) Lukas Burger et al.   NUCLEIC ACIDS RESEARCH

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

DNA methylation in spermatozoa as a prospective marker in andrology

(2013) R. Kläver et al.   Andrology

The molecular function and clinical phenotype of partial deletions of the IGF2/H19 imprinting control region depends on the spatial arrangement of the remaining CTCF-binding sites

(2012) Jasmin Beygo et al.   HUMAN MOLECULAR GENETICS

Reprogramming DNA methylation in the mammalian life cycle: building and breaking epigenetic barriers

(2012) S. Seisenberger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates

(2011) Antoine Molaro et al.   CELL

DNA-binding factors shape the mouse methylome at distal regulatory regions

(2011) Michael B. Stadler et al.   NATURE

Contribution of DEAH-box protein DHX16 in human pre-mRNA splicing

(2010) Marieta Gencheva et al.   BIOCHEMICAL JOURNAL

The transcriptome of spermatozoa used in homologous intrauterine insemination varies considerably between samples that achieve pregnancy and those that do not

(2009) Sandra García-Herrero et al.   FERTILITY AND STERILITY