Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study
出版年份 2021 全文链接
标题
Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study
作者
关键词
-
出版物
Genome Medicine
Volume 13, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-09-13
DOI
10.1186/s13073-021-00960-5
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry
- (2021) Sébastien Bridel et al. RESEARCH IN MICROBIOLOGY
- Factors Associated With MALDI-TOF Mass Spectral Quality of Species Identification in Clinical Routine Diagnostics
- (2021) Aline Cuénod et al. Frontiers in Cellular and Infection Microbiology
- Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae
- (2020) Sophia David et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Subspecies Typing of Streptococcus agalactiae Based on Ribosomal Subunit Protein Mass Variation by MALDI-TOF MS
- (2019) Julian Rothen et al. Frontiers in Microbiology
- Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
- (2019) Carla Rodrigues et al. RESEARCH IN MICROBIOLOGY
- Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
- (2019) Kelly L. Wyres et al. PLoS Genetics
- Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread
- (2019) Sophia David et al. Nature Microbiology
- Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
- (2019) Cristina Merla et al. Frontiers in Microbiology
- Ecotin, a microbial inhibitor of serine proteases, blocks multiple complement dependent and independent microbicidal activities of human serum
- (2019) Zoltán Attila Nagy et al. PLoS Pathogens
- Description of Klebsiella grimontii sp. nov.
- (2018) Virginie Passet et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
- (2018) Ryan R. Wick et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis
- (2018) Evelina Tacconelli et al. LANCET INFECTIOUS DISEASES
- Colonization, Infection, and the Accessory Genome of Klebsiella pneumoniae
- (2018) Rebekah M. Martin et al. Frontiers in Cellular and Infection Microbiology
- Typing and species identification of clinical Klebsiella isolates by Fourier-transform infrared (FTIR) spectroscopy and matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry
- (2018) Ariane G. Dinkelacker et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Klebsiella huaxiensis sp. nov., recovered from human urine
- (2018) Yiyi Hu et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and Related Phylogroups by MALDI-TOF Mass Spectrometry
- (2018) Carla Rodrigues et al. Frontiers in Microbiology
- Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae
- (2017) Danesh Moradigaravand et al. Genome Biology and Evolution
- Microbial strain-level population structure and genetic diversity from metagenomes
- (2017) Duy Tin Truong et al. GENOME RESEARCH
- Matrix assisted laser desorption time of flight mass spectrometry (MALDI-TOF MS) in clinical microbiology
- (2017) Silvia Angeletti JOURNAL OF MICROBIOLOGICAL METHODS
- Occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in the European survey of carbapenemase-producing Enterobacteriaceae (EuSCAPE): a prospective, multinational study
- (2017) Hajo Grundmann et al. LANCET INFECTIOUS DISEASES
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae , Klebsiella variicola , and Klebsiella quasipneumoniae
- (2017) S. Wesley Long et al. mSphere
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health
- (2015) Kathryn E. Holt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mapping the Evolution of Hypervirulent Klebsiella pneumoniae
- (2015) Carsten Struve et al. mBio
- Contaminated Handwashing Sinks as the Source of a Clonal Outbreak of KPC-2-Producing Klebsiella oxytoca on a Hematology Ward
- (2014) Eva Leitner et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Genotypes of Klebsiella oxytoca Isolates from Patients with Nosocomial Pneumonia Are Distinct from Those of Isolates from Patients with Antibiotic-Associated Hemorrhagic Colitis
- (2014) K. A. T. Herzog et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Discrimination of Escherichia coli O157, O26 and O111 from Other Serovars by MALDI-TOF MS Based on the S10-GERMS Method
- (2014) Teruyo Ojima-Kato et al. PLoS One
- Klebsiella variicola Is a Frequent Cause of Bloodstream Infection in the Stockholm Area, and Associated with Higher Mortality Compared to K. pneumoniae
- (2014) Makaoui Maatallah et al. PLoS One
- Enterotoxicity of a nonribosomal peptide causes antibiotic-associated colitis
- (2014) G. Schneditz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MALDIquant: a versatile R package for the analysis of mass spectrometry data
- (2012) S. Gibb et al. BIOINFORMATICS
- Klebsiella michiganensis sp. nov., A New Bacterium Isolated from a Tooth Brush Holder
- (2012) Ratul Saha et al. CURRENT MICROBIOLOGY
- Klebsiella pneumoniae liver abscess: a new invasive syndrome
- (2012) L Kristopher Siu et al. LANCET INFECTIOUS DISEASES
- The N-end rule pathway and regulation by proteolysis
- (2011) Alexander Varshavsky PROTEIN SCIENCE
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Top-Down Identification of Protein Biomarkers in Bacteria with Unsequenced Genomes
- (2009) Colin Wynne et al. ANALYTICAL CHEMISTRY
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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