A chromosome-level Camptotheca acuminata genome assembly provides insights into the evolutionary origin of camptothecin biosynthesis
出版年份 2021 全文链接
标题
A chromosome-level Camptotheca acuminata genome assembly provides insights into the evolutionary origin of camptothecin biosynthesis
作者
关键词
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出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-06-10
DOI
10.1038/s41467-021-23872-9
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis
- (2021) Amit Rai et al. Nature Communications
- Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole genome duplications
- (2020) Caifei Zhang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Bifunctional Cytochrome P450 Enzymes Involved in Camptothecin Biosynthesis
- (2019) Yun Yang et al. ACS Chemical Biology
- Cytochrome P450 enzymes: A driving force of plant diterpene diversity
- (2019) Ulschan Bathe et al. PHYTOCHEMISTRY
- Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid Glycoside
- (2018) Nektaria Petronikolou et al. CHEMBIOCHEM
- LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
- (2017) Shujun Ou et al. PLANT PHYSIOLOGY
- De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads
- (2017) Jonas Korlach et al. GigaScience
- Effects of light on production of camptothecin and expression of key enzyme genes in seedlings of Camptotheca acuminate Decne
- (2016) Yuanyuan Hu et al. ACTA PHYSIOLOGIAE PLANTARUM
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
- (2016) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Metabolite Diversity in Alkaloid Biosynthesis: A Multilane (Diastereomer) Highway for Camptothecin Synthesis in Camptotheca acuminata
- (2016) Radin Sadre et al. PLANT CELL
- Evolution of gene duplication in plants
- (2016) Nicholas Panchy et al. PLANT PHYSIOLOGY
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Perspectives on Biologically Active Camptothecin Derivatives
- (2015) Ying-Qian Liu et al. MEDICINAL RESEARCH REVIEWS
- HISAT: a fast spliced aligner with low memory requirements
- (2015) Daehwan Kim et al. NATURE METHODS
- Genome-guided investigation of plant natural product biosynthesis
- (2015) Franziska Kellner et al. PLANT JOURNAL
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
- (2014) Marco Biasini et al. NUCLEIC ACIDS RESEARCH
- 7-Deoxyloganetic acid synthase catalyzes a key 3 step oxidation to form 7-deoxyloganetic acid in Catharanthus roseus iridoid biosynthesis
- (2014) Vonny Salim et al. PHYTOCHEMISTRY
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- The seco-iridoid pathway from Catharanthus roseus
- (2014) Karel Miettinen et al. Nature Communications
- Camptothecin-producing endophytic fungus Trichoderma atroviride LY357: isolation, identification, and fermentation conditions optimization for camptothecin production
- (2013) Xiang Pu et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Geraniol hydroxylase and hydroxygeraniol oxidase activities of the CYP76 family of cytochrome P450 enzymes and potential for engineering the early steps of the (seco)iridoid pathway
- (2013) René Höfer et al. METABOLIC ENGINEERING
- Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
- (2013) Mira V. Han et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
- (2013) Joshua N Burton et al. NATURE BIOTECHNOLOGY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- A 7-Deoxyloganetic Acid Glucosyltransferase Contributes a Key Step in Secologanin Biosynthesis in Madagascar Periwinkle
- (2013) K. Asada et al. PLANT CELL
- Virus-induced gene silencing identifiesCatharanthus roseus7-deoxyloganic acid-7-hydroxylase, a step in iridoid and monoterpene indole alkaloid biosynthesis
- (2013) Vonny Salim et al. PLANT JOURNAL
- Hi–C: A comprehensive technique to capture the conformation of genomes
- (2012) Jon-Matthew Belton et al. METHODS
- An alternative route to cyclic terpenes by reductive cyclization in iridoid biosynthesis
- (2012) Fernando Geu-Flores et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
- Development of Transcriptomic Resources for Interrogating the Biosynthesis of Monoterpene Indole Alkaloids in Medicinal Plant Species
- (2012) Elsa Góngora-Castillo et al. PLoS One
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Adaptive seeds tame genomic sequence comparison
- (2011) S. M. Kielbasa et al. GENOME RESEARCH
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
- (2009) Garrett M. Morris et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- The Leaf Epidermome of Catharanthus roseus Reveals Its Biochemical Specialization
- (2008) J. Murata et al. PLANT CELL
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
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