Review
Medicine, General & Internal
Asad Ullah, Neelam Mabood, Muhammad Maqbool, Luqman Khan, Mujib Ullah
Summary: Ongoing research is focusing on understanding the reasons behind lasting immunity to the SARS-CoV-2 virus, with a particular interest in the role of AID in antibody generation.
INTERNATIONAL JOURNAL OF MEDICAL SCIENCES
(2021)
Review
Immunology
Priyal Mistry, Fatima Barmania, Juanita Mellet, Kimberly Peta, Adele Strydom, Ignatius M. Viljoen, William James, Siamon Gordon, Michael S. Pepper
Summary: The emergence of SARS-CoV-2 and the subsequent COVID-19 pandemic has led to the development of vaccines and investigation into the immune response to the virus. Variants of the virus have presented challenges to vaccine effectiveness. It is important to understand the immune memory response and continue to develop new antibody treatments and future vaccine approaches.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Isha M. Wilson, Meredith N. Frazier, Jian-Liang Li, Thomas A. Randall, Robin E. Stanley
Summary: Global sequencing efforts on SARS-CoV-2 have revealed mutations in the viral protein Nsp15, which affects viral replication and immune evasion. Mutations were found to decrease the enzyme activity and increase the monomeric form of Nsp15. These findings provide insights into the impact of viral variants on virus evolution and drug design.
JOURNAL OF MOLECULAR BIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Maaran Michael Rajah, Mathieu Hubert, Elodie Bishop, Nell Saunders, Remy Robinot, Ludivine Grzelak, Delphine Planas, Jeremy Dufloo, Stacy Gellenoncourt, Alice Bongers, Marija Zivaljic, Cyril Planchais, Florence Guivel-Benhassine, Francoise Porrot, Hugo Mouquet, Lisa A. Chakrabarti, Julian Buchrieser, Olivier Schwartz
Summary: Severe cases of COVID-19 are associated with lung abnormalities, notably the presence of syncytial pneumocytes. New variants of the virus, such as Alpha and Beta, have shown an increased ability to form larger and more numerous syncytia compared to the ancestral strain D614G. The spike proteins of these variants also display higher affinity for the ACE2 receptor and can be inhibited by interferon-induced transmembrane proteins. Individual mutations in the spike proteins affect fusogenicity, ACE2 binding, and recognition by monoclonal antibodies. Additionally, the Delta variant spike protein has been found to trigger faster fusion than the D614G strain, indicating an enhanced syncytia formation capability in emerging SARS-CoV-2 variants.
Article
Immunology
Niklas Vesper, Yaneth Ortiz, Frauke Bartels-Burgahn, Jianying Yang, Kathrin de la Rosa, Matthias Tenbusch, Sebastian Schulz, Stephanie Finzel, Hans-Martin Jaeck, Hermann Eibel, Reinhard E. Voll, Michael Reth
Summary: The SARS-CoV-2 pandemic has spread globally, causing severe health crisis and resulting in virus mutations generating new variants that evade human immune response. The BSFA method provides a useful tool for evaluating the humoral immunity against emerging variants of SARS-CoV-2.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Multidisciplinary Sciences
Kejun Guo, Bradley S. Barrett, James H. Morrison, Kaylee L. Mickens, Eszter K. Vladar, Kim J. Hasenkrug, Eric M. Poeschla, Mario L. Santiago
Summary: The emergence of SARS-CoV-2 variants with enhanced resistance to interferons suggests that evasion of innate immunity may be a driving force in the evolution of the virus.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Multidisciplinary Sciences
Carolina Lucas, Chantal B. F. Vogels, Inci Yildirim, Jessica E. Rothman, Peiwen Lu, Vatter Monteiro, Jeff R. Gehlhausen, Melissa Campbell, Julio Silva, Alexandra Tabachnikova, Mario A. Pena-Hernandez, M. Catherine Muenker, Mallery Breban, Joseph R. Fauver, Subhasis Mohanty, Jiefang Huang, Albert C. Shaw, Albert Ko, Saad B. Omer, Nathan D. Grubaugh, Akiko Iwasaki
Summary: This study found that individuals previously infected with the virus had higher antibody titres post-vaccination compared to those who were uninfected, but both groups reached comparable levels of neutralization responses to the ancestral strain after the second vaccine dose. Comprehensive analysis of 16 locally circulating SARS-CoV-2 variants revealed varying degrees of reduction in neutralization capacity associated with specific mutations in the spike gene, suggesting vaccine boosters as a relevant future strategy to counteract the impact of emerging variants on antibody neutralizing activity.
Article
Medicine, General & Internal
Peter J. Halfmann, Steven J. Frey, Kathryn Loef, Makoto Kuroda, Tadashi Maemura, Tammy Armbrust, Jie E. Yang, Yixuan J. Hou, Ralph Baric, Elizabeth R. Wright, Yoshihiro Kawaoka, Ravi S. Kane
Summary: Researchers have developed a vaccine based on the conserved S2 subunit of the S protein and optimized the adjuvant and immunization regimen. The vaccine showed efficacy against SARS-CoV-2 variants and other coronaviruses.
Article
Virology
Anna F. Cavaliere, Laura Marchi, Donatella Aquilini, Tamara Brunelli, Pier L. Vasarri
Summary: The report presents a case of a newborn born to an asymptomatic mother infected with SARS-CoV-2, showing the presence of specific IgG antibodies passed from the mother to the fetus, emphasizing neonatal passive immunity.
JOURNAL OF MEDICAL VIROLOGY
(2021)
Article
Biochemistry & Molecular Biology
Yanqiang Han, Zhilong Wang, Zhiyun Wei, Igor Schapiro, Jinjin Li
Summary: This study investigated the effects of residue mutations in the S glycoprotein of SARS-CoV-2 on binding affinity using molecular dynamics simulations and sequence analysis. The findings demonstrated varying degrees of enhancements in binding affinity for different variants, providing a basis for further research on virus mutations.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
(2021)
Article
Immunology
Peifang Sun, Corey A. Balinsky, Le Jiang, Vihasi Jani, Tran Khanh Long, Ying Cheng, Mary Ann Serote, Andrew B. Smith, Burnetta F. Fears, Stephanie K. Gatrell, Victor A. Sugiharto, Huawei Chen, Zhiwen Zhang, Tatyana Belinskaya, Qi Qiu, William D. Graham, Megan A. Schilling, Anthony R. Jones, Karen S. Corson, Nicholas J. Martin, Andrew G. Letizia, Robert D. Hontz
Summary: This cross-sectional study among US Department of Defense active-duty military service members showed that SARS-CoV-2 Omicron variants BA.1, BA.2, and BA.5 can evade antibody neutralization in vaccinated individuals. The ability of Omicron and its subvariants to escape immunity has increased, leading to a rise in reinfections even among vaccinated individuals. The study emphasizes the importance of continuous monitoring for emerging variants and the exploration of alternative vaccine targets.
JOURNAL OF INFECTIOUS DISEASES
(2023)
Article
Multidisciplinary Sciences
Brock Kingstad-Bakke, Woojong Lee, Shaswath S. Chandrasekar, David J. Gasper, Cristhian Salas-Quinchucua, Thomas Cleven, Jeremy A. Sullivan, Adel Talaat, Jorge E. Osorio, M. Suresh
Summary: The study found that mucosal or parenteral immunization effectively controlled the virus and protected the lungs from damage with or without neutralizing antibodies. The protection provided by mucosal memory CD8 T cells was largely redundant in the presence of neutralizing antibodies, but unhelped mucosal memory CD8 T cells provided no protection against the homologous SARS-CoV-2 without CD4 T cells and neutralizing antibodies.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Review
Immunology
Yaru Wu, Min Zhang, Cui Yuan, Zhenling Ma, Wenqing Li, Yanyan Zhang, Lijuan Su, Jun Xu, Wei Liu
Summary: This review discusses the role of cGAS-STING signaling in SARS-CoV-2 infection and summarizes the potential therapeutics of STING agonists as virus vaccine adjuvants.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Cell Biology
Lisa H. Tostanoski, Jingyou Yu, Noe B. Mercado, Katherine McMahan, Catherine Jacob-Dolan, Amanda J. Martinot, Cesar Piedra-Mora, Tochi Anioke, Aiquan Chang, Victoria M. Giffin, David L. Hope, Huahua Wan, Esther A. Bondzie, Shant H. Mahrokhian, Linda M. Wrijil, Katherine Bauer, Laurent Pessaint, Maciel Porto, Joseph Piegols, Andrew Faudree, Brittany Spence, Swagata Kar, Fatima Amanat, Florian Krammer, Hanne Andersen, Mark G. Lewis, Frank Wegmann, Roland Zahn, Hanneke Schuitemaker, Dan H. Barouch
Summary: This study explored how mutations in spike proteins of different SARS-CoV-2 variants affect natural and vaccine-induced immunity, finding that primary infection with the WA1/2020 strain provided strong protection, while antibodies induced by the Ad26.COV2.S vaccine showed reduced neutralizing activity against the B.1.351 strain but still offered effective protection.
SCIENCE TRANSLATIONAL MEDICINE
(2021)
Article
Immunology
Marios Koutsakos, Wen Shi Lee, Arnold Reynaldi, Hyon-Xhi Tan, Grace Gare, Paul Kinsella, Kwee Chin Liew, George Taiaroa, Deborah A. Williamson, Helen E. Kent, Eva Stadler, Deborah Cromer, David S. Khoury, Adam K. Wheatley, Jennifer A. Juno, Miles P. Davenport, Stephen J. Kent
Summary: This study investigates the early kinetics of spike-specific humoral and cellular immunity after vaccination and breakthrough infections of seropositive individuals. The findings reveal that vaccination of seropositive individuals induces robust recall of immune responses, while recall of vaccine-elicited responses in breakthrough infections is delayed and variable, depending on the infecting variant.
Article
Microscopy
Zunaira Rauf, Anabia Sohail, Saddam Hussain Khan, Asifullah Khan, Jeonghwan Gwak, Muhammad Maqbool
Summary: This article proposes a lymphocyte analysis framework based on a deep convolutional neural network, which can effectively detect lymphocytes in immunohistochemistry images. The framework demonstrates excellent generalization on multiple datasets and has the potential to be developed into a medical diagnostic tool.
Article
Chemistry, Multidisciplinary
Muhammad Maqbool, Toheed Akhter, Muhammad Faheem, Sohail Nadeem, Chan Ho Park, Asif Mahmood
Summary: In this study, a mesoporous silica material incorporated with niobium oxide (Nb/MSM) catalyst was synthesized via hydrothermal method for CO2 free-ethylene oxide (EO) production through partial oxidation of ethylene. The structural properties of the catalyst were characterized using XRD, TEM, and N-2 adsorption-desorption. The liquid phase epoxidation (LPE) of ethylene was conducted with peracetic acid (PAA) as an oxidant, and the successful production of EO was confirmed by GC chromatography.
Review
Materials Science, Multidisciplinary
Waqas Ahmad, Ayesha Khan Tareen, Karim Khan, Maaz Khan, Qasim Khan, Zhiming Wang, Muhammad Maqbool
Summary: Low dimensional materials are promising for electronic and optoelectronic devices due to their unique electronic structure and physiochemical properties. Mixed dimensional heterostructures (MDHs) combine different nanomaterials with various dimensionalities, offering great potential for a wide range of applications. Various dimensionalities of MDHs, especially 2D materials, enhance charge carrier mobilities, optical absorption, and response, making them ideal for developing next-generation optoelectronic devices.
APPLIED MATERIALS TODAY
(2023)
Article
Engineering, Manufacturing
Akbar Bashir, Muhammad Maqbool, Ruicong Lv, Ali Usman, Waseem Aftab, Hongyu Niu, Lei Kang, Shu-Lin Bai
Summary: The demand for high thermal conductivity has led to the development of materials that can efficiently manipulate thermal energy. Polymer-based composites on hexagonal boron nitride (h-BN) are effective for providing thermally conductive and electrically insulating pathways, but it is difficult to establish strong interfacial connections within polymer chains using BN alone. In this study, hydroxylation of h-BN and carbon nanotubes (CNT) was achieved, followed by the formation of a urethane crosslink between the filler-filler interfaces and thermoplastic polyurethane (TPU) matrix. This unique hybrid structure achieved an unprecedented thermal conductivity of 4.52 Wm-1K-1 at just 60 wt% loading of h-BN and 2 wt% of CNT, as well as outstanding yielding strength and Young's modulus by tension.
COMPOSITES PART A-APPLIED SCIENCE AND MANUFACTURING
(2023)
Article
Optics
Shahzad Anwar, Qasim Khan, Ghafar Ali, Maaz Khan, Muhammad Maqbool
Summary: A triple-band perfect metamaterial absorber was fabricated in the terahertz regime using an asymmetric metallic I-shaped resonator and metallic ground layer with a dielectric spacer. The simulation results demonstrated that the absorber had three resonance modes at frequencies 1.655 THz, 1.985 THz, and 2.86 THz, with an absorption rate of approximately 95%. Through investigating the electromagnetic field energy distribution, the origin of the triple-band absorber was revealed. The absorber's sensing performance for refractive index and thickness of the analyte was analyzed as well.
EUROPEAN PHYSICAL JOURNAL D
(2023)
Review
Materials Science, Biomaterials
Muhammad Ikram, Muhammad Ahsaan Bari, Muhammad Bilal, Farzana Jamal, Walid Nabgan, Junaid Haider, Ali Haider, Ghazanfar Nazir, Aryan Dilawar Khan, Karim Khan, Ayesha K. Tareen, Qasim Khan, Ghafar Ali, Muhammad Imran, Emily Caffrey, Muhammad Maqbool
Summary: Sensors based on nanostructured materials, especially graphene, have attracted significant attention due to their high sensitivity and accuracy. This review focuses on the fabrication of graphene-based biosensors and gas sensors with improved performance. The synthesis of graphene-based materials with enhanced properties has made them ideal for flexible and stable sensors. Various modification approaches have been proposed to enhance the selectivity of these materials. The review provides a comprehensive analysis of the latest developments in graphene-based sensors.
BIOMATERIALS ADVANCES
(2023)
Article
Materials Science, Multidisciplinary
Syeda Tayaba, Hassam Sethi, Huma Shahid, Rumaisa Malik, Muhammad Ikram, Salamat Ali, Sunbal Khaliq, Qasim Khan, Muhammad Maqbool
Summary: This review article provides a pedagogical explanation of the fundamental idea, basic theories, desired properties, and material realizations of superconductors. It classifies superconductors, such as organic superconductors, metallic superconductors, magnetic superconductors, oxides without copper, heavy fermions, pyrochlore oxides, ruthenocuprates, rare-earth borocarbides, high-temperature superconductors, carbon (C) superconductors, chalcogens, silicon (Si) superconductors, germanium (Ge) based superconductors and related compounds. The article outlines various superconducting materials found so far and discusses the challenges of commercialization and the potential future applications, with a focus on superconductors based on Si, Ge, and C.
MATERIALS SCIENCE AND ENGINEERING B-ADVANCED FUNCTIONAL SOLID-STATE MATERIALS
(2023)
Article
Chemistry, Physical
Kendall A. Williams, Brandon K. Wright, Michael W. Perrigin, Emily Caffrey, Qasim Khan, Muhammad Maqbool
Summary: This study investigated the radiation shielding properties of five materials (83Bi209, 74W184, 50Sn119, ZnS, and CaCO3). The results showed that the electronic, atomic, and energy transfer cross-sections decreased with increasing gamma-ray energy. The mass attenuation coefficients increased as the Z/A ratio increased, while the mass energy-transfer coefficients decreased with an increasing Z/A ratio. These materials are suitable for radiation shielding and protection purposes and can be used as lead alternatives to avoid environmental toxicity.
RADIATION PHYSICS AND CHEMISTRY
(2023)
Review
Chemistry, Multidisciplinary
Muhammad Ikram, Ali Raza, Syed Ossama Ali Ahmad, Atif Ashfaq, Muhammad Usama Akbar, Muhammad Imran, Sobia Dilpazir, Maaz Khan, Qasim Khan, Muhammad Maqbool
Summary: Modern society requires advanced technologies based on renewable and sustainable energy resources to address environmental remediation challenges. Solar-inspired photocatalytic applications using 2D materials have shown unique potential for green and efficient solutions in water purification, CO2 reduction, and bacterial removal. However, further optimization is needed to achieve practical and commercial applications. This review focuses on recent advancements in engineered 2D materials for photocatalysis and explores surface and interface engineering techniques as well as hybridization approaches to enhance their photocatalytic potential.
ADVANCED MATERIALS INTERFACES
(2023)
Article
Infectious Diseases
Wei Li, Pariya L. Fazeli, Ge Wang, Muhammad Maqbool, Victor A. Del Bene, Kristen Triebel, Karli M. Martin, David Vance
Summary: This study aimed to examine the factors predicting an active lifestyle in HIV+ and HIV- adults from the United States Deep South. The results showed that lower levels of depression, higher socioeconomic status (SES), and younger age were significant predictors of a more active lifestyle for the full sample, HIV+, and HIV- participants, respectively. Therefore, socioeconomic status and depression should be considered when developing and implementing lifestyle interventions.
HIV AIDS-RESEARCH AND PALLIATIVE CARE
(2023)
Article
Chemistry, Physical
Zuha Fatima, Nayab Ali, Mackenzie A. Williams, Sohan Dhar, Muhammad Maqbool
Summary: The Klein-Nishina electronic and atomic cross-sections and Compton mass attenuation coefficients were calculated for various tissues at different X-ray or γ-ray energies. The results showed that the electronic cross-section decreased with increasing photon energy, while the atomic cross-section initially increased and then decreased for the investigated tissues. The Compton mass attenuation coefficient exhibited a complex relationship with the effective charge number Z of the tissues. These findings are important for precise dose calculation and delivery in radiographic imaging and radiation treatment planning.
RADIATION PHYSICS AND CHEMISTRY
(2023)
Correction
Chemistry, Multidisciplinary
Muhammad Maqbool, Toheed Akhter, Muhammad Faheem, Sohail Nadeem, Chan Ho Park