A roadmap for rRNA folding and assembly during transcription

Transcriptional Riboswitches Integrate Timescales for Bacterial Gene Expression Control

(2021) Catherine E. Scull et al.   Frontiers in Molecular Biosciences

Alternative RNA structures formed during transcription depend on elongation rate and modify RNA processing

(2021) Tassa Saldi et al.   MOLECULAR CELL

The kinetic landscape of an RNA-binding protein in cells

(2021) Deepak Sharma et al.   NATURE

snoRNPs: Functions in Ribosome Biogenesis

(2020) Sandeep Ojha et al.   Biomolecules

Pseudouridine Synthase RsuA Captures an Assembly Intermediate that Is Stabilized by Ribosomal Protein S17

(2020) Kumudie Jayalath et al.   Biomolecules

Nascent Transcript Folding Plays a Major Role in Determining RNA Polymerase Elongation Rates

(2020) Tomasz W. Turowski et al.   MOLECULAR CELL

Structure-Based Mechanisms of a Molecular RNA Polymerase/Chaperone Machine Required for Ribosome Biosynthesis

(2020) Yong-Heng Huang et al.   MOLECULAR CELL

Real-time monitoring of single ZTP riboswitches reveals a complex and kinetically controlled decision landscape

(2020) Boyang Hua et al.   Nature Communications

snR30/U17 Small Nucleolar Ribonucleoprotein: A Critical Player during Ribosome Biogenesis

(2020) Timothy John Vos et al.   Cells

Co-transcriptional Loading of RNA Export Factors Shapes the Human Transcriptome

(2019) Nicolas Viphakone et al.   MOLECULAR CELL

Structural Basis of Transcription: RNA Polymerase Backtracking and Its Reactivation

(2019) Mo’men Abdelkareem et al.   MOLECULAR CELL

Biological Pathway Specificity in the Cell-Does Molecular Diversity Matter?

(2019) Nils G. Walter   BIOESSAYS

Coordinated Control of rRNA Processing by RNA Polymerase I

(2019) Catherine E. Scull et al.   TRENDS IN GENETICS

Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration

(2019) Jingdong Cheng et al.   MOLECULAR CELL

Transcription Increases the Cooperativity of Ribonucleoprotein Assembly

(2019) Margaret L. Rodgers et al.   CELL

Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding

(2019) Olivier Duss et al.   CELL

The Biogenesis of SRP RNA Is Modulated by an RNA Folding Intermediate Attained during Transcription

(2019) Shingo Fukuda et al.   MOLECULAR CELL

A ligand-gated strand displacement mechanism for ZTP riboswitch transcription control

(2019) Eric J. Strobel et al.   Nature Chemical Biology

Single-nucleotide control of tRNA folding cooperativity under near-cellular conditions

(2019) Kathleen A. Leamy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SrmB Rescues Trapped Ribosome Assembly Intermediates

(2019) Jessica N. Rabuck-Gibbons et al.   JOURNAL OF MOLECULAR BIOLOGY

Assembly and structure of the SSU processome — a nucleolar precursor of the small ribosomal subunit

(2018) Jonas Barandun et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The RNA‐binding protein Hfq is important for ribosome biogenesis and affects translation fidelity

(2018) José M Andrade et al.   EMBO JOURNAL

A brave new world of RNA-binding proteins

(2018) Matthias W. Hentze et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Mimicking Co-Transcriptional RNA Folding Using a Superhelicase

(2018) Boyang Hua et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Ribosome assembly coming into focus

(2018) Sebastian Klinge et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Real-time assembly of ribonucleoprotein complexes on nascent RNA transcripts

(2018) Olivier Duss et al.   Nature Communications

RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes

(2018) Lukas Brüning et al.   Nature Communications

Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions

(2017) Ling Xu et al.   STRUCTURE

Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes

(2017) Sanjaya C. Abeysirigunawardena et al.   Nature Communications

Genome-Wide Analysis of RNA Secondary Structure

(2016) Philip C. Bevilacqua et al.   Annual Review of Genetics

Modular Assembly of the Bacterial Large Ribosomal Subunit

(2016) Joseph H. Davis et al.   CELL

Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression

(2016) Jesse M. Engreitz et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function

(2016) Katherine E. Sloan et al.   RNA Biology

A Two-Way Street: Regulatory Interplay between RNA Polymerase and Nascent RNA Structure

(2016) Jinwei Zhang et al.   TRENDS IN BIOCHEMICAL SCIENCES

Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly

(2015) Yury S Polikanov et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly

(2015) Yury S Polikanov et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones

(2014) Thomas R. Cech et al.   CELL

Protein-guided RNA dynamics during early ribosome assembly

(2014) Hajin Kim et al.   NATURE

RNA-guided assembly of Rev-RRE nuclear export complexes

(2014) Yun Bai et al.   eLife

Yeast and human RNA helicases involved in ribosome biogenesis: Current status and perspectives

(2013) Olga Rodríguez-Galán et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Protein induced fluorescence enhancement (PIFE) for probing protein–nucleic acid interactions

(2013) Helen Hwang et al.   CHEMICAL SOCIETY REVIEWS

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

(2013) John L. Woolford et al.   GENETICS

In Vivo X-Ray Footprinting of Pre-30S Ribosomes Reveals Chaperone-Dependent Remodeling of Late Assembly Intermediates

(2013) Sarah F. Clatterbuck Soper et al.   MOLECULAR CELL

Coupling pre-mRNA processing to transcription on the RNA factory assembly line

(2013) Kuo-Ming Lee et al.   RNA Biology

DExD/H-box RNA helicases in ribosome biogenesis

(2013) Roman Martin et al.   RNA Biology

On the importance of cotranscriptional RNA structure formation

(2013) D. Lai et al.   RNA

The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome

(2013) J. M. Engreitz et al.   SCIENCE

Zero-Mode Waveguides for Single-Molecule Analysis

(2012) Paul Zhu et al.   Annual Review of Biophysics

Nus transcription elongation factors and RNase III modulate small ribosome subunit biogenesis inEscherichia coli

(2012) Mikhail Bubunenko et al.   MOLECULAR MICROBIOLOGY

Direct Observation of Cotranscriptional Folding in an Adenine Riboswitch

(2012) K. L. Frieda et al.   SCIENCE

RNA Folding Pathways and the Self-Assembly of Ribosomes

(2011) Sarah A. Woodson   ACCOUNTS OF CHEMICAL RESEARCH

Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

(2010) Yuntao S. Mao et al.   NATURE CELL BIOLOGY

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

(2010) Peter Csermely et al.   TRENDS IN BIOCHEMICAL SCIENCES

mRNA Secondary Structures Fold Sequentially But Exchange Rapidly In Vivo

(2010) Elisabeth M. Mahen et al.   PLOS BIOLOGY

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

(2008) Tadepalli Adilakshmi et al.   NATURE