标题
Unifying Phylogenetic Birth–Death Models in Epidemiology and Macroevolution
作者
关键词
-
出版物
SYSTEMATIC BIOLOGY
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2021-06-22
DOI
10.1093/sysbio/syab049
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Fundamental identifiability limits in molecular epidemiology
- (2021) Stilianos Louca et al. MOLECULAR BIOLOGY AND EVOLUTION
- Simulating trees with millions of species
- (2020) Stilianos Louca BIOINFORMATICS
- A Multi-Type Birth-Death model for Bayesian inference of lineage-specific birth and death rates
- (2020) Joëlle Barido-Sottani et al. SYSTEMATIC BIOLOGY
- Extant timetrees are consistent with a myriad of diversification histories
- (2020) Stilianos Louca et al. NATURE
- Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum
- (2020) Michael J Landis et al. SYSTEMATIC BIOLOGY
- Detecting Lineage-Specific Shifts in Diversification: A Proper Likelihood Approach
- (2020) Giovanni Laudanno et al. SYSTEMATIC BIOLOGY
- Estimating Epidemic Incidence and Prevalence from Genomic Data
- (2019) Timothy G Vaughan et al. MOLECULAR BIOLOGY AND EVOLUTION
- BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
- (2019) Remco Bouckaert et al. PLoS Computational Biology
- A General and Efficient Algorithm for the Likelihood of Diversification and Discrete-Trait Evolutionary Models
- (2019) Stilianos Louca et al. SYSTEMATIC BIOLOGY
- Coupling adaptive molecular evolution to phylodynamics using fitness-dependent birth-death models
- (2019) David A Rasmussen et al. eLife
- The coalescent of a sample from a binary branching process
- (2018) Amaury Lambert THEORETICAL POPULATION BIOLOGY
- Hidden state models improve state-dependent diversification approaches, including biogeographical models
- (2018) Daniel S. Caetano et al. EVOLUTION
- Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth–death model
- (2018) Joëlle Barido-Sottani et al. Journal of the Royal Society Interface
- Speciation gradients and the distribution of biodiversity
- (2017) Dolph Schluter et al. NATURE
- Environmentally driven extinction and opportunistic origination explain fern diversification patterns
- (2017) Samuli Lehtonen et al. Scientific Reports
- The spread of hepatitis C virus genotype 1a in North America: a retrospective phylogenetic study
- (2016) Jeffrey B Joy et al. LANCET INFECTIOUS DISEASES
- The challenges to inferring the regulators of biodiversity in deep time
- (2016) Thomas H. G. Ezard et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylogenetically resolving epidemiologic linkage
- (2016) Ethan O. Romero-Severson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction
- (2016) Jeremy M. Beaulieu et al. SYSTEMATIC BIOLOGY
- A general consumer-resource population model
- (2015) K. D. Lafferty et al. SCIENCE
- Age-Dependent Speciation Can Explain the Shape of Empirical Phylogenies
- (2015) Oskar Hagen et al. SYSTEMATIC BIOLOGY
- Getting to the root of epidemic spread with phylodynamic analysis of genomic data
- (2015) Louis du Plessis et al. TRENDS IN MICROBIOLOGY
- Phylogenetic approaches for studying diversification
- (2014) Hélène Morlon ECOLOGY LETTERS
- How traits shape trees: new approaches for detecting character state-dependent lineage diversification
- (2014) J. Ng et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Sampling through time and phylodynamic inference with coalescent and birth-death models
- (2014) E. M. Volz et al. Journal of the Royal Society Interface
- Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model
- (2014) D. Kuhnert et al. Journal of the Royal Society Interface
- The fossilized birth-death process for coherent calibration of divergence-time estimates
- (2014) T. A. Heath et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence Data
- (2014) Daniele Silvestro et al. SYSTEMATIC BIOLOGY
- Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models
- (2014) Veronika Boskova et al. PLoS Computational Biology
- Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration
- (2014) Alexandra Gavryushkina et al. PLoS Computational Biology
- Recursive algorithms for phylogenetic tree counting
- (2013) Alexandra Gavryushkina et al. Algorithms for Molecular Biology
- Recovering speciation and extinction dynamics based on phylogenies
- (2013) T. Stadler JOURNAL OF EVOLUTIONARY BIOLOGY
- Uncovering epidemiological dynamics in heterogeneous host populations using phylogenetic methods
- (2013) T. Stadler et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Birth–death models and coalescent point processes: The shape and probability of reconstructed phylogenies
- (2013) Amaury Lambert et al. THEORETICAL POPULATION BIOLOGY
- Linking the Investigations of Character Evolution and Species Diversification
- (2012) Karen Magnuson-Ford et al. AMERICAN NATURALIST
- TEMPO AND MODE IN PLANT BREEDING SYSTEM EVOLUTION
- (2012) Emma E. Goldberg et al. EVOLUTION
- Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)
- (2012) T. Stadler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversitree: comparative phylogenetic analyses of diversification in R
- (2012) Richard G. FitzJohn Methods in Ecology and Evolution
- Inferring Epidemic Contact Structure from Phylogenetic Trees
- (2012) Gabriel E. Leventhal et al. PLoS Computational Biology
- Complex Population Dynamics and the Coalescent Under Neutrality
- (2011) Erik M. Volz GENETICS
- Estimating the Basic Reproductive Number from Viral Sequence Data
- (2011) Tanja Stadler et al. MOLECULAR BIOLOGY AND EVOLUTION
- Reconciling molecular phylogenies with the fossil record
- (2011) H. Morlon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mammalian phylogeny reveals recent diversification rate shifts
- (2011) T. Stadler PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record
- (2011) R. S. Etienne et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification
- (2011) Emma E. Goldberg et al. SYSTEMATIC BIOLOGY
- Prolonging the Past Counteracts the Pull of the Present: Protracted Speciation Can Explain Observed Slowdowns in Diversification
- (2011) Rampal S. Etienne et al. SYSTEMATIC BIOLOGY
- Sampling-through-time in birth–death trees
- (2010) Tanja Stadler JOURNAL OF THEORETICAL BIOLOGY
- Inferring the Dynamics of Diversification: A Coalescent Approach
- (2010) Hélène Morlon et al. PLOS BIOLOGY
- Phylodynamics of Infectious Disease Epidemics
- (2009) Erik M. Volz et al. GENETICS
- On incomplete sampling under birth–death models and connections to the sampling-based coalescent
- (2009) Tanja Stadler JOURNAL OF THEORETICAL BIOLOGY
- Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies
- (2009) Richard G. FitzJohn et al. SYSTEMATIC BIOLOGY
- EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?
- (2008) Daniel L. Rabosky et al. EVOLUTION
- The conditioned reconstructed process
- (2008) Tanja Gernhard JOURNAL OF THEORETICAL BIOLOGY
- Rates of evolutionary change in viruses: patterns and determinants
- (2008) Siobain Duffy et al. NATURE REVIEWS GENETICS
- Density-dependent diversification in North American wood warblers
- (2008) D. L Rabosky et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search