4.7 Article

Faecal microbiota and antibiotic resistance genes in migratory waterbirds with contrasting habitat use

期刊

SCIENCE OF THE TOTAL ENVIRONMENT
卷 783, 期 -, 页码 -

出版社

ELSEVIER
DOI: 10.1016/j.scitotenv.2021.146872

关键词

Waterbird movements; Antibiotic resistance; Gut microbiota; Bacterial composition; Habitat use

资金

  1. Spanish National Government [PID2019-108962GB-C21, PID2019-108962GB-C22]
  2. CODISPERSAL [CGL201676067P]
  3. University of Cadiz (Spain)
  4. infrastructure of INMAR (University of Cadiz)
  5. ICTS-RBD
  6. ICRA
  7. Economy and Knowledge Department of the Catalan Government through Consolidated Research Group [ICRA-ENV 2017 SGR 1124]
  8. European Regional Development Fund (FEDER)
  9. CERCA program of the Catalan Government

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This study found significant differences in gut microbiome composition and abundance of antibiotic resistance genes among herbivorous and omnivorous migratory waterbirds wintering in South-West Spain. Birds feeding in landfills had higher abundance of resistance genes, potentially serving as reservoirs for antimicrobial resistant bacteria.
Migratory birds may have a vital role in the spread of antimicrobial resistance across habitats and regions, but empirical data remain scarce. We investigated differences in the gut microbiome composition and the abundance of antibiotic resistance genes (ARGs) in faeces from four migratory waterbirds wintering in South-West Spain that differ in their habitat use. The white stork Ciconia ciconia and lesser black-backed gull Carus Justus are omnivorous and opportunistic birds that use highly anthropogenic habitats such as landfills and urban areas. The greylag goose Anser anser and common crane Grus grus are herbivores and use more natural habitats. Fresh faeces from 15 individuals of each species were analysed to assess the composition of bacterial communities using 16S rRNA amplicon-targeted sequencing, and to quantify the abundance of the Class I integron integrase gene (intl1) as well as genes encoding resistance to sulfonamides (sul1), beta-lactams (bla(TEM), bla(KPC). and bla(NDM)), tetracyclines (tetW), fluoroquinolones (qnrS), and colistin (mcr-1) using qPCR. Bacterial communities in gull faeces were the richest and most diverse. Beta diversity analysis showed segregation in faecal communities between bird spedes, but those from storks and gulls were the most similar, these being the species that regularly feed in landfills. Potential bacterial pathogens identified in faeces differed significantly between bird species, with higher relative abundance in gulls. Faeces from birds that feed in landfills (stork and gull) contained a significantly higher abundance of ARGs (sul1, bla(TEM), and tetW). Genes conferring resistance to last resort antibiotics such as carbapenems (bla(KPC)) and colistin (mcr-1) were only observed in faeces from gulls. These results show that these bird species are reservoirs of antimicrobial resistant bacteria and suggest that waterbirds may disseminate antibiotic resistance across environments (e.g., from landfills to ricefields or water supplies), and thus constitute a risk for their further spread to wildlife and humans. (C) 2021 Elsevier B.V. All rights reserved.

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