4.6 Article

Genome analysis of cotton leafroll dwarf virus reveals variability in the silencing suppressor protein, genotypes and genomic recombinants in the USA

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PLOS ONE
卷 16, 期 7, 页码 -

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PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pone.0252523

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  1. Georgia Cotton Commission [AWD0001057]
  2. Cotton Incorporated [AWD00011840]
  3. USDA-NIFA-CPPM [FP00017728]
  4. FAAR-ROAR [AWD00011237]
  5. USDA-HATCH [1020319]

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The emerging virus Cotton leafroll dwarf virus (CLRDV) in cotton production in the USA, particularly in Georgia and Alabama, has shown genetic diversity in comparison to isolates from South America. Variations in specific amino acid positions, such as 72 and 120, were observed in the isolates from different regions, suggesting potential differences in virulence and resistance-breaking capabilities. Recombination events were also detected in the sequenced isolates, highlighting the need for further research on CLRDV population structure and genetic diversity for effective management strategies in the USA cotton belt.
Cotton leafroll dwarf virus (CLRDV) is an emerging virus in cotton production in Georgia and several other Southeastern states in the USA. To better understand the genetic diversity of the virus population, the near complete genome sequences of six isolates from Georgia and one from Alabama were determined. The isolates sequenced were 5,866 nucleotides with seven open reading frames (ORFs). The isolates from Georgia were >94% identical with other isolates from the USA and South America. In the silencing suppressor protein (P0), at amino acid position 72, the isolates from Georgia and Alabama had a valine (V), similar to resistant-breaking 'atypical' genotypes in South America, while the Texas isolate had isoleucine (I), similar to the more aggressive 'typical' genotypes of CLRDV. At position 120, arginine (R) is unique to Georgia and China isolates, but absent in Alabama, Texas and South American isolates. Ten potential recombinant events were detected in the isolates sequenced. An increased understanding of CLRDV population structure and genetic diversity will help develop management strategies for CLRDV in the USA cotton belt.

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